myRT

myRT report for GCA_000233515.1_Clostridium_sp_7_3_54FAA_V2

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Seq: JH376514.1 Clostridium sp. 7_3_54FAA genomic scaffold supercont1.3, whole genome shotgun sequence (534692 bp)
Overview 1 RT 1: 645-3003 bp 2 RT 2: 42836-54444 bp 3 RT 3: 445955-452060 bp Neighborhood of RT #1 [645, 3062] RVT-GII Intron_maturas2 HNHc SR_TndX_transposase Neighborhood of RT #2 [42836, 54581] PrgI VirB4_CagE TraC-F-type RVT-GII Intron_maturas2 RVT-GII HNHc DUF4315 DUF4366 Neighborhood of RT #3 [445955, 452173] N6_N4_Mtase RVT-GII Intron_maturas2 VirB4_CagE VirB4_CagE PrgI Feature: gene Location: 645-2435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 918-1728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 8-1 728 bp Feature: domain Description: Intron_maturas2 Location: 1905-2097 bp Feature: domain Description: Intron_maturas2 Location: 1 905-2097 bp Feature: domain Description: HNHc Note: nucleases Location: 2271-2415 bp Feature: domain Description: HNHc Note: nucleases Location: 2271 -241 5 bp Feature: gene Location: 2507-2833 bp Feature: gene Location: 2907-3062 bp Feature: domain Description: SR_TndX_transposase Location: 2931-3003 bp Feature: domain Description: SR_TndX_transposase Location: 2931 -3003 bp Feature: gene Location: 42836-43225 bp Feature: domain Description: PrgI Location: 42851-43124 bp Feature: domain Description: PrgI Location: 42851 -431 24 bp Feature: gene Location: 43179-45326 bp Feature: domain Description: VirB4_CagE Location: 43272-43509 bp Feature: domain Description: VirB4_CagE Location: 43272-43509 bp Feature: domain Description: TraC-F-type Location: 43947-45288 bp Feature: domain Description: TraC-F-type Location: 43947-45288 bp Feature: gene Location: 45819-47609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46086-46899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46086-46899 bp Feature: domain Description: Intron_maturas2 Location: 46983-47277 bp Feature: domain Description: Intron_maturas2 Location: 46983-47277 bp Feature: gene Location: 47986-48795 bp Feature: gene Location: 48833-50545 bp Feature: gene Location: 51198-53156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51534-52278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 534-52278 bp Feature: domain Description: HNHc Note: nucleases Location: 52857-52998 bp Feature: domain Description: HNHc Note: nucleases Location: 52857-52998 bp Feature: gene Location: 53612-53881 bp Feature: domain Description: DUF4315 Location: 53621-53873 bp Feature: domain Description: DUF431 5 Location: 53621 -53873 bp Feature: gene Location: 53868-54581 bp Feature: domain Description: DUF4366 Location: 54042-54444 bp Feature: domain Description: DUF4366 Location: 54042-54444 bp Feature: gene Location: 445955-446914 bp Feature: domain Description: N6_N4_Mtase Location: 446033-446885 bp Feature: domain Description: N6_N4_Mtase Location: 446033-446885 bp Feature: gene Location: 446911-447120 bp Feature: gene Location: 447295-449085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447562-448375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 447562-448375 bp Feature: domain Description: Intron_maturas2 Location: 448459-448756 bp Feature: domain Description: Intron_maturas2 Location: 448459-448756 bp Feature: gene Location: 449614-451821 bp Feature: domain Description: VirB4_CagE Location: 449743-450181 bp Feature: domain Description: VirB4_CagE Location: 449743-4501 81 bp Feature: domain Description: VirB4_CagE Location: 450418-451786 bp Feature: domain Description: VirB4_CagE Location: 45041 8-451 786 bp Feature: gene Location: 451772-452173 bp Feature: domain Description: PrgI Location: 451787-452060 bp Feature: domain Description: PrgI Location: 451 787-452060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PrgI (pfam12666), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), DUF4315 (pfam14193), DUF4366 (pfam14283), N6_N4_Mtase (pfam01555)

Seq: JH376538.1 Clostridium sp. 7_3_54FAA genomic scaffold supercont1.27, whole genome shotgun sequence (1891 bp)
Overview 1 RT 1: 431-1655 bp Neighborhood of RT #1 [431, 1822] RVT-GII GIIM Feature: gene Location: 431-1822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 746-1373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 746-1373 bp Feature: domain Description: GIIM Note: maturase Location: 1427-1655 bp Feature: domain Description: GIIM Note: maturase Location: 142 7-1655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JH376537.1 Clostridium sp. 7_3_54FAA genomic scaffold supercont1.26, whole genome shotgun sequence (1907 bp)
Overview 1 RT 1: 103-1333 bp Neighborhood of RT #1 [103, 1401] RVT-GII GIIM Feature: gene Location: 103-1401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361-1048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 61-1048 bp Feature: domain Description: GIIM Note: maturase Location: 1126-1333 bp Feature: domain Description: GIIM Note: maturase Location: 1126-13 3 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JH376512.1 Clostridium sp. 7_3_54FAA genomic scaffold supercont1.1, whole genome shotgun sequence (990287 bp)
Overview 1 RT 1: 56923-60614 bp Neighborhood of RT #1 [56923, 60649] RVT-DGRs HTH_3 Feature: gene Location: 56923-57846 bp Feature: gene Location: 57898-58494 bp Feature: gene Location: 58800-59999 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58989-59733 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58989-59733 bp Feature: gene Location: 59971-60228 bp Feature: gene Location: 60428-60649 bp Feature: domain Description: HTH_3 Location: 60455-60614 bp Feature: domain Description: HTH_3 Location: 604 55-60614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_3 (pfam01381)

Seq: JH376517.1 Clostridium sp. 7_3_54FAA genomic scaffold supercont1.6, whole genome shotgun sequence (430758 bp)
Overview 1 RT 1: 192450-195977 bp Neighborhood of RT #1 [192450, 196066] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 192450-193592 bp Feature: domain Description: PHA00653 Location: 192573-193590 bp Feature: domain Description: PHA0065 3 Location: 1925 73-1935 90 bp Feature: gene Location: 193633-193989 bp Feature: domain Description: Avd_like Location: 193663-193969 bp Feature: domain Description: Avd_like Location: 193663-193969 bp Feature: gene Location: 194316-195377 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 194544-195246 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1945 44-195 246 bp Feature: gene Location: 195402-195581 bp Feature: gene Location: 195584-196066 bp Feature: domain Description: Phage_holin_4_1 Location: 195617-195977 bp Feature: domain Description: Phage_holin_4_1 Location: 195 617-195 977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: JH376513.1 Clostridium sp. 7_3_54FAA genomic scaffold supercont1.2, whole genome shotgun sequence (659113 bp)
Overview 1 RT 1: 493461-500118 bp 2 RT 2: 618579-623639 bp Neighborhood of RT #1 [493461, 500525] IME4 VirB4_CagE TraC-F-type RVT_N RVT-GII GIIM HNH Cyt_C5_DNA_methylase Cyt_C5_DNA_methylase Neighborhood of RT #2 [618579, 623639] TraG-D_C HNHc RVT-GII VirD4 Feature: gene Location: 493461-493922 bp Feature: domain Description: IME4 Location: 493464-493890 bp Feature: domain Description: IME4 Location: 49346 4-493890 bp Feature: gene Location: 494281-495792 bp Feature: domain Description: VirB4_CagE Location: 494398-494638 bp Feature: domain Description: VirB4_CagE Location: 494398-4946 38 bp Feature: domain Description: TraC-F-type Location: 495085-495754 bp Feature: domain Description: TraC-F-type Location: 495085-495754 bp Feature: gene Location: 496327-498006 bp Feature: RT Description: RVT_N Location: 496405-496645 bp Feature: RT Description: RVT_N Location: 496 405-496 6 45 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496693-497353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496 6 93-497353 bp Feature: domain Description: GIIM Note: maturase Location: 497407-497641 bp Feature: domain Description: GIIM Note: maturase Location: 497407-4976 41 bp Feature: domain Description: HNH Note: nucleases Location: 497854-497971 bp Feature: domain Description: HNH Note: nucleases Location: 497854-497971 bp Feature: gene Location: 499003-499741 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 499021-499507 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 499021-499507 bp Feature: gene Location: 499908-500525 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 499914-500118 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 499914-500118 bp Feature: gene Location: 618579-619340 bp Feature: domain Description: TraG-D_C Location: 618756-619107 bp Feature: domain Description: TraG-D_C Location: 6 18756 -6 19107 bp Feature: gene Location: 619471-619884 bp Feature: domain Description: HNHc Note: nucleases Location: 619606-619774 bp Feature: domain Description: HNHc Note: nucleases Location: 6 196 06 -6 19774 bp Feature: gene Location: 620033-621376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 620348-621080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 20348-6 21080 bp Feature: gene Location: 622125-623174 bp Feature: domain Description: VirD4 Location: 622332-623157 bp Feature: domain Description: VirD4 Location: 6 22332-6 23157 bp Feature: gene Location: 623460-623639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IME4 (COG4725), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), Cyt_C5_DNA_methylase (cl30459), TraG-D_C (pfam12696), HNHc (smart00507)
VirD4 (COG3505)

Seq: JH376522.1 Clostridium sp. 7_3_54FAA genomic scaffold supercont1.11, whole genome shotgun sequence (162881 bp)
Overview 1 RT 1: 41576-49578 bp Neighborhood of RT #1 [41576, 49595] MarR_2 RVT-GII GIIM RVT-GII GIIM PDC1_HK_sensor Tar MA Feature: gene Location: 41576-42115 bp Feature: gene Location: 42115-42846 bp Feature: domain Description: MarR_2 Location: 42265-42367 bp Feature: domain Description: MarR_2 Location: 42265-42367 bp Feature: gene Location: 43274-44515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43478-44135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4347 8-44135 bp Feature: domain Description: GIIM Note: maturase Location: 44216-44429 bp Feature: domain Description: GIIM Note: maturase Location: 44216-44429 bp Feature: gene Location: 45068-46348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45278-45893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4527 8-45893 bp Feature: domain Description: GIIM Note: maturase Location: 45956-46175 bp Feature: domain Description: GIIM Note: maturase Location: 45956-4617 5 bp Feature: gene Location: 46796-46954 bp Feature: gene Location: 47526-49595 bp Feature: domain Description: PDC1_HK_sensor Location: 47832-48168 bp Feature: domain Description: PDC1_HK_sensor Location: 47 832-48168 bp Feature: domain Description: Tar Location: 48312-48735 bp Feature: domain Description: Tar Location: 48312-487 35 bp Feature: domain Description: MA Location: 48837-49578 bp Feature: domain Description: MA Location: 48837 -4957 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR_2 (pfam12802), RVT-GII, GIIM (pfam08388), PDC1_HK_sensor (cd18773), Tar (COG0840), MA (smart00283)

Seq: JH376526.1 Clostridium sp. 7_3_54FAA genomic scaffold supercont1.15, whole genome shotgun sequence (91942 bp)
Overview 1 RT 1: 85810-91365 bp Neighborhood of RT #1 [85810, 91376] MviM MviM LysR RVT-Retrons YuiF COG1786 Feature: gene Location: 85810-86994 bp Feature: domain Description: MviM Location: 85831-86128 bp Feature: domain Description: MviM Location: 8 58 31-8 6128 bp Feature: domain Description: MviM Location: 86203-86986 bp Feature: domain Description: MviM Location: 8 6203-8 698 6 bp Feature: gene Location: 87315-88259 bp Feature: domain Description: LysR Location: 87354-88212 bp Feature: domain Description: LysR Location: 8 7354-8 8 212 bp Feature: gene Location: 88307-89293 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88472-89027 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8 8 472-8 9027 bp Feature: gene Location: 89591-90913 bp Feature: domain Description: YuiF Location: 89612-90911 bp Feature: domain Description: YuiF Location: 8 9612-90911 bp Feature: gene Location: 90966-91376 bp Feature: domain Description: COG1786 Location: 90981-91365 bp Feature: domain Description: COG178 6 Location: 9098 1-91365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviM (COG0673), LysR (COG0583), RVT-Retrons, YuiF (COG2056), COG1786 (Swiveling domain associated with predicted aconitase )

Seq: JH376528.1 Clostridium sp. 7_3_54FAA genomic scaffold supercont1.17, whole genome shotgun sequence (85816 bp)
Overview 1 RT 1: 39760-43035 bp Neighborhood of RT #1 [39760, 43571] Phytochelatin_C RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 39760-40140 bp Feature: gene Location: 40153-40509 bp Feature: domain Description: Phytochelatin_C Location: 40168-40348 bp Feature: domain Description: Phytochelatin_C Location: 40168-40348 bp Feature: gene Location: 40488-41633 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40698-41424 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4069 8-41424 bp Feature: gene Location: 42061-42405 bp Feature: domain Description: Avd_like Location: 42085-42397 bp Feature: domain Description: Avd_like Location: 42085-4239 7 bp Feature: gene Location: 42477-43571 bp Feature: domain Description: FGE-sulfatase Location: 42717-43035 bp Feature: domain Description: FGE-sulfatase Location: 42717-43035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phytochelatin_C (pfam09328), RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: JH376515.1 Clostridium sp. 7_3_54FAA genomic scaffold supercont1.4, whole genome shotgun sequence (478497 bp)
Overview 1 RT 1: 63026-66684 bp Neighborhood of RT #1 [63026, 66684] RVT-DGRs Feature: gene Location: 63026-63139 bp Feature: gene Location: 63141-63473 bp Feature: gene Location: 63433-64635 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63712-64378 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 63712-64378 bp Feature: gene Location: 65034-66332 bp Feature: gene Location: 66430-66684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs