myRT

myRT report for GCA_000233695.3_ASM23369v3

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Seq: CM001488.1 Desulfobacter postgatei 2ac9 chromosome, whole genome shotgun sequence (3974658 bp)
Overview 1 RT 1: 143078-147841 bp 2 RT 2: 1424961-1433177 bp 3 RT 3: 1721600-1728939 bp 4 RT 4: 1909001-1915392 bp 5 RT 5: 2382040-2389812 bp 6 RT 6: 2696652-2702439 bp 7 RT 7: 2942208-2947885 bp 8 RT 8: 3183497-3190409 bp 9 RT 9: 3244265-3249485 bp 10 RT 10: 3290478-3294336 bp Neighborhood of RT #1 [143078, 147846] 2_5_ligase FapA RVT-GII GIIM CobA_CobO_BtuR Neighborhood of RT #2 [1424961, 1433203] RVT-GII RVT-GII GIIM DUF1566 DUF1566 ZntA ZntA ZntA Neighborhood of RT #3 [1721600, 1728939] NapF NapF Fer4_8 FlpD glcD RVT-GII GIIM Neighborhood of RT #4 [1909001, 1915493] MoxR YfmG RVT-DGRs YfmG Neighborhood of RT #5 [2382040, 2389826] DDE_5 RVT-GII GIIM PKCI_related PRK00481 Neighborhood of RT #6 [2696652, 2702573] DUF2442 Big_1 PKD Big_1 RVT-GII GIIM Peptidase_C1 PKD Neighborhood of RT #7 [2942208, 2947890] RVT-GII GIIM Ppnp Neighborhood of RT #8 [3183497, 3190411] CHASE2 RpfG RVT-GII GIIM NERD PRK10535 Neighborhood of RT #9 [3244265, 3249508] bioB YotD RVT-GII PRK05753 RPS27A Neighborhood of RT #10 [3290478, 3294336] Transposase_31 RVT-GII GIIM Feature: gene Location: 143078-143509 bp Ori: EIM62193.1 Feature: domain Description: 2_5_ligase Location: 143117-143345 bp Feature: domain Description: 2_5_ligase Location: 1 431 1 7-1 43345 bp Feature: gene Location: 143442-144926 bp Ori: EIM62194.1 Feature: domain Description: FapA Location: 143688-144654 bp Feature: domain Description: FapA Location: 1 43688-1 44654 bp Feature: gene Location: 145114-146550 bp Ori: EIM62195.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145519-146176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4551 9-1 461 76 bp Feature: domain Description: GIIM Note: maturase Location: 146257-146476 bp Feature: domain Description: GIIM Note: maturase Location: 1 46257-1 46476 bp Feature: gene Location: 146862-147344 bp Feature: gene Location: 147334-147846 bp Ori: EIM62197.1 Feature: domain Description: CobA_CobO_BtuR Location: 147340-147841 bp Feature: domain Description: CobA_CobO_BtuR Location: 1 47340-1 47841 bp Feature: gene Location: 1424961-1425458 bp Feature: gene Location: 1425490-1425750 bp Feature: gene Location: 1425800-1426579 bp Ori: EIM63279.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1426076-1426553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 426076-1 426553 bp Feature: gene Location: 1426891-1428327 bp Ori: EIM63280.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1427296-1427953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 427296-1 427953 bp Feature: domain Description: GIIM Note: maturase Location: 1428034-1428253 bp Feature: domain Description: GIIM Note: maturase Location: 1 428034-1 428253 bp Feature: gene Location: 1429215-1430135 bp Ori: EIM63281.1 Feature: domain Description: DUF1566 Location: 1429245-1429596 bp Feature: domain Description: DUF1 566 Location: 1 429245-1 429596 bp Feature: domain Description: DUF1566 Location: 1429758-1430109 bp Feature: domain Description: DUF1 566 Location: 1 429758-1 4301 09 bp Feature: gene Location: 1430486-1433203 bp Ori: EIM63282.1 Feature: domain Description: ZntA Location: 1430504-1430705 bp Feature: domain Description: ZntA Location: 1 430504-1 430705 bp Feature: domain Description: ZntA Location: 1430717-1432919 bp Feature: domain Description: ZntA Location: 1 43071 7-1 43291 9 bp Feature: domain Description: ZntA Location: 1432985-1433177 bp Feature: domain Description: ZntA Location: 1 432985-1 4331 77 bp Feature: gene Location: 1721600-1722550 bp Ori: EIM63523.1 Feature: domain Description: NapF Location: 1721630-1721696 bp Feature: domain Description: NapF Location: 1 721 630-1 721 696 bp Feature: domain Description: NapF Location: 1721795-1722002 bp Feature: domain Description: NapF Location: 1 721 795-1 722002 bp Feature: domain Description: Fer4_8 Location: 1722038-1722098 bp Feature: domain Description: Fer4_8 Location: 1 722038-1 722098 bp Feature: domain Description: FlpD Location: 1722173-1722539 bp Feature: domain Description: FlpD Location: 1 7221 73-1 722539 bp Feature: gene Location: 1722575-1724008 bp Ori: EIM63524.1 Feature: domain Description: glcD Location: 1722701-1723946 bp Feature: domain Description: glcD Location: 1 722701 -1 723946 bp Feature: gene Location: 1725587-1726993 bp Ori: EIM63525.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1725962-1726619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 725962-1 72661 9 bp Feature: domain Description: GIIM Note: maturase Location: 1726700-1726919 bp Feature: domain Description: GIIM Note: maturase Location: 1 726700-1 72691 9 bp Feature: gene Location: 1728114-1728677 bp Feature: gene Location: 1728844-1728939 bp Feature: gene Location: 1909001-1909981 bp Ori: EIM63680.1 Feature: domain Description: MoxR Location: 1909082-1909889 bp Feature: domain Description: MoxR Location: 1 909082-1 909889 bp Feature: gene Location: 1909981-1912809 bp Ori: EIM63681.1 Feature: domain Description: YfmG Location: 1911997-1912687 bp Feature: domain Description: YfmG Location: 1 91 1 997-1 91 2687 bp Feature: gene Location: 1913267-1914271 bp Ori: EIM63682.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1913477-1914065 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 91 3477-1 91 4065 bp Feature: gene Location: 1914271-1914516 bp Feature: gene Location: 1914561-1915493 bp Ori: EIM63684.1 Feature: domain Description: YfmG Location: 1914690-1915392 bp Feature: domain Description: YfmG Location: 1 91 4690-1 91 5392 bp Feature: gene Location: 2382040-2383446 bp Ori: EIM64080.1 Feature: domain Description: DDE_5 Location: 2382235-2382742 bp Feature: domain Description: DDE_5 Location: 2382235-2382742 bp Feature: gene Location: 2383623-2383727 bp Feature: gene Location: 2385420-2386856 bp Ori: EIM64082.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2385825-2386482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2385825-2386482 bp Feature: domain Description: GIIM Note: maturase Location: 2386563-2386782 bp Feature: domain Description: GIIM Note: maturase Location: 2386563-2386782 bp Feature: gene Location: 2388711-2389043 bp Ori: EIM64083.1 Feature: domain Description: PKCI_related Location: 2388723-2389032 bp Feature: domain Description: PKCI_related Location: 2388723-2389032 bp Feature: gene Location: 2389083-2389826 bp Ori: EIM64084.1 Feature: domain Description: PRK00481 Location: 2389098-2389812 bp Feature: domain Description: PRK00481 Location: 2389098-238981 2 bp Feature: gene Location: 2696652-2696912 bp Ori: EIM64364.1 Feature: domain Description: DUF2442 Location: 2696679-2696886 bp Feature: domain Description: DUF2442 Location: 2696679-2696886 bp Feature: gene Location: 2697585-2698415 bp Ori: EIM64365.1 Feature: domain Description: Big_1 Location: 2697591-2697732 bp Feature: domain Description: Big_1 Location: 2697591 -2697732 bp Feature: domain Description: PKD Location: 2697876-2698080 bp Feature: domain Description: PKD Location: 2697876-2698080 bp Feature: domain Description: Big_1 Location: 2698173-2698302 bp Feature: domain Description: Big_1 Location: 26981 73-2698302 bp Feature: gene Location: 2698607-2699998 bp Ori: EIM64366.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2698979-2699660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2698979-2699660 bp Feature: domain Description: GIIM Note: maturase Location: 2699729-2699933 bp Feature: domain Description: GIIM Note: maturase Location: 2699729-2699933 bp Feature: gene Location: 2700478-2700582 bp Feature: gene Location: 2700624-2702573 bp Ori: EIM64368.1 Feature: domain Description: Peptidase_C1 Location: 2700987-2701692 bp Feature: domain Description: Peptidase_C1 Location: 2700987-2701 692 bp Feature: domain Description: PKD Location: 2702205-2702439 bp Feature: domain Description: PKD Location: 2702205-2702439 bp Feature: gene Location: 2942208-2942312 bp Feature: gene Location: 2944006-2945442 bp Ori: EIM64582.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2944411-2945068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294441 1 -2945068 bp Feature: domain Description: GIIM Note: maturase Location: 2945149-2945368 bp Feature: domain Description: GIIM Note: maturase Location: 29451 49-2945368 bp Feature: gene Location: 2946910-2947443 bp Feature: gene Location: 2947582-2947890 bp Ori: EIM64584.1 Feature: domain Description: Ppnp Location: 2947615-2947885 bp Feature: domain Description: Ppnp Location: 294761 5-2947885 bp Feature: gene Location: 3183497-3185500 bp Ori: EIM64801.1 Feature: domain Description: CHASE2 Location: 3183626-3184625 bp Feature: domain Description: CHASE2 Location: 31 83626-31 84625 bp Feature: domain Description: RpfG Location: 3184844-3185468 bp Feature: domain Description: RpfG Location: 31 84844-31 85468 bp Feature: gene Location: 3186442-3186684 bp Feature: gene Location: 3186665-3187996 bp Ori: EIM64803.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3186953-3187607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 86953-31 87607 bp Feature: domain Description: GIIM Note: maturase Location: 3187685-3187907 bp Feature: domain Description: GIIM Note: maturase Location: 31 87685-31 87907 bp Feature: gene Location: 3188184-3188837 bp Ori: EIM64804.1 Feature: domain Description: NERD Location: 3188283-3188616 bp Feature: domain Description: NERD Location: 31 88283-31 8861 6 bp Feature: gene Location: 3189206-3190411 bp Ori: EIM64805.1 Feature: domain Description: PRK10535 Location: 3189224-3190409 bp Feature: domain Description: PRK1 0535 Location: 31 89224-31 90409 bp Feature: gene Location: 3244265-3245260 bp Ori: EIM64851.1 Feature: domain Description: bioB Location: 3244367-3245057 bp Feature: domain Description: bioB Location: 3244367-3245057 bp Feature: gene Location: 3245341-3245841 bp Ori: EIM64852.1 Feature: domain Description: YotD Location: 3245347-3245830 bp Feature: domain Description: YotD Location: 3245347-3245830 bp Feature: gene Location: 3246565-3247881 bp Ori: EIM64853.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3246847-3247528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3246847-3247528 bp Feature: gene Location: 3248863-3249276 bp Ori: EIM64854.1 Feature: domain Description: PRK05753 Location: 3248872-3249271 bp Feature: domain Description: PRK05753 Location: 3248872-3249271 bp Feature: gene Location: 3249344-3249508 bp Ori: EIM64855.1 Feature: domain Description: RPS27A Location: 3249398-3249485 bp Feature: domain Description: RPS27A Location: 3249398-3249485 bp Feature: gene Location: 3290478-3290693 bp Feature: gene Location: 3290748-3291758 bp Ori: EIM64886.1 Feature: domain Description: Transposase_31 Location: 3290784-3291399 bp Feature: domain Description: Transposase_31 Location: 3290784-3291 399 bp Feature: gene Location: 3291953-3292480 bp Ori: EIM64887.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3291980-3292094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3291 980-3292094 bp Feature: domain Description: GIIM Note: maturase Location: 3292169-3292391 bp Feature: domain Description: GIIM Note: maturase Location: 32921 69-3292391 bp Feature: gene Location: 3293442-3293978 bp Feature: gene Location: 3294058-3294336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2_5_ligase (TIGR02258), FapA (pfam03961), RVT-GII, GIIM (pfam08388), CobA_CobO_BtuR (pfam02572), DUF1566 (pfam07603), ZntA (COG2217), NapF (COG1145), Fer4_8 (pfam13183), FlpD (pfam02662)
glcD (TIGR00387), MoxR (COG0714), YfmG (COG1262), RVT-DGRs, DDE_5 (pfam13546), PKCI_related (cd01276), PRK00481 (NAD-dependent deacetylase; Provisional), DUF2442 (pfam10387), Big_1 (pfam02369), PKD (smart00089)
Peptidase_C1 (pfam00112), Ppnp, CHASE2 (smart01080), RpfG (COG3437), NERD (pfam08378), PRK10535 (macrolide ABC transporter ATP-binding protein/permease MacB), bioB (TIGR00433), YotD (COG1592), PRK05753 (nucleoside diphosphate kinase regulator; Provisional), RPS27A (COG2051)
Transposase_31 (pfam04754)