myRT

myRT report for GCA_000233815.2_ASM23381v2

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Seq: AFTG01000446.1 Pseudomonas syringae pv. actinidiae str. CRAFRU8.43 contig535, whole genome shotgun sequence (1424 bp)
Overview 1 RT 1: 57-1167 bp Neighborhood of RT #1 [57, 1340] RVT-GII GIIM Feature: gene Location: 57-1340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297-91 2 bp Feature: domain Description: GIIM Note: maturase Location: 957-1167 bp Feature: domain Description: GIIM Note: maturase Location: 957-1 1 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AFTG01000309.1 Pseudomonas syringae pv. actinidiae str. CRAFRU8.43 contig282, whole genome shotgun sequence (4862 bp)
Overview 1 RT 1: 1624-3896 bp Neighborhood of RT #1 [1624, 4648] UvrD_C RVT-UG9 Feature: gene Location: 1624-2568 bp Feature: gene Location: 2929-3519 bp Feature: domain Description: UvrD_C Location: 3253-3448 bp Feature: domain Description: UvrD_C Location: 32 53-3448 bp Feature: gene Location: 3617-4648 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3623-3896 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 362 3-3896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: AFTG01000094.1 Pseudomonas syringae pv. actinidiae str. CRAFRU8.43 contig103, whole genome shotgun sequence (20105 bp)
Overview 1 RT 1: 12940-18876 bp Neighborhood of RT #1 [12940, 18911] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 12940-14028 bp Feature: domain Description: modC_ABC Location: 12955-14020 bp Feature: domain Description: modC_ABC Location: 12955-14020 bp Feature: gene Location: 14117-15172 bp Feature: domain Description: Top1 Location: 14150-15164 bp Feature: domain Description: Top1 Location: 14150-15164 bp Feature: gene Location: 16003-17838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16264-17077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16264-17077 bp Feature: domain Description: Intron_maturas2 Location: 17173-17488 bp Feature: domain Description: Intron_maturas2 Location: 17173 -17488 bp Feature: domain Description: HNHc Note: nucleases Location: 17611-17776 bp Feature: domain Description: HNHc Note: nucleases Location: 17611-17776 bp Feature: gene Location: 18078-18269 bp Feature: gene Location: 18276-18911 bp Feature: domain Description: DUF2625 Location: 18288-18876 bp Feature: domain Description: DUF2625 Location: 18288-18876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: AFTG01000044.1 Pseudomonas syringae pv. actinidiae str. CRAFRU8.43 contig182, whole genome shotgun sequence (31364 bp)
Overview 1 RT 1: 29122-31073 bp Neighborhood of RT #1 [29122, 31180] PAAR_motif RVT-GII GIIM Feature: gene Location: 29122-29376 bp Feature: domain Description: PAAR_motif Location: 29146-29347 bp Feature: domain Description: PAAR_motif Location: 2914 6-2934 7 bp Feature: gene Location: 29387-29869 bp Feature: gene Location: 29912-31180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30116-30773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30116-30773 bp Feature: domain Description: GIIM Note: maturase Location: 30851-31073 bp Feature: domain Description: GIIM Note: maturase Location: 30851-31073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAAR_motif (pfam05488), RVT-GII, GIIM (pfam08388)

Seq: AFTG01000016.1 Pseudomonas syringae pv. actinidiae str. CRAFRU8.43 contig27, whole genome shotgun sequence (46980 bp)
Overview 1 RT 1: 42385-45614 bp Neighborhood of RT #1 [42385, 46573] ComA-like_MBL-fold RVT-Retrons Feature: gene Location: 42385-42648 bp Feature: gene Location: 43002-44420 bp Feature: domain Description: ComA-like_MBL-fold Location: 43551-44037 bp Feature: domain Description: ComA-like_MBL-fold Location: 435 5 1-44037 bp Feature: gene Location: 44864-46573 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45017-45614 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45 017-45 614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), RVT-Retrons