myRT

myRT report for GCA_000234155.1_Clos_clos_2_1_49FAA_V1

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Seq: JH376872.1 Clostridium clostridioforme 2_1_49FAA genomic scaffold supercont1.3, whole genome shotgun sequence (722831 bp)
Overview 1 RT 1: 369408-375247 bp Neighborhood of RT #1 [369408, 375249] RVT-GII RVT-GII HNHc DUF3852 Feature: gene Location: 369408-370022 bp Feature: gene Location: 370093-371730 bp Feature: gene Location: 372460-373416 bp Ori: EHG31092.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372775-373402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372775-373402 bp Feature: gene Location: 373407-374345 bp Ori: EHG31093.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373413-373500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37341 3-373500 bp Feature: domain Description: HNHc Note: nucleases Location: 374058-374226 bp Feature: domain Description: HNHc Note: nucleases Location: 374058-374226 bp Feature: gene Location: 374574-375038 bp Feature: gene Location: 375139-375249 bp Ori: EHG31095.1 Feature: domain Description: DUF3852 Location: 375145-375247 bp Feature: domain Description: DUF3852 Location: 3751 45-375247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), DUF3852 (pfam12963)

Seq: JH376877.1 Clostridium clostridioforme 2_1_49FAA genomic scaffold supercont1.8, whole genome shotgun sequence (166880 bp)
Overview 1 RT 1: 11823-20152 bp Neighborhood of RT #1 [11823, 20259] thiolase BglG PTS_EIIA_2 RVT-GII INT_RitC_C_like Phage_int_SAM_1 INT_RitB_C_like RVT-GII GIIM PHA02517 HTH_21 Feature: gene Location: 11823-13004 bp Ori: EHG28156.1 Feature: domain Description: thiolase Location: 11838-12990 bp Feature: domain Description: thiolase Location: 11838-12 990 bp Feature: gene Location: 13052-15007 bp Ori: EHG28157.1 Feature: domain Description: BglG Location: 13055-14378 bp Feature: domain Description: BglG Location: 13055-14378 bp Feature: domain Description: PTS_EIIA_2 Location: 14612-14993 bp Feature: domain Description: PTS_EIIA_2 Location: 14612 -14993 bp Feature: gene Location: 15445-16203 bp Ori: EHG28158.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15793-16081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15793-16081 bp Feature: gene Location: 16384-16536 bp Ori: EHG28159.1 Feature: domain Description: INT_RitC_C_like Location: 16387-16534 bp Feature: domain Description: INT_RitC_C_like Location: 16387-16534 bp Feature: gene Location: 16710-17078 bp Ori: EHG28160.1 Feature: domain Description: Phage_int_SAM_1 Location: 16755-17007 bp Feature: domain Description: Phage_int_SAM_1 Location: 16755-17007 bp Feature: gene Location: 17065-17235 bp Ori: EHG28161.1 Feature: domain Description: INT_RitB_C_like Location: 17074-17167 bp Feature: domain Description: INT_RitB_C_like Location: 17074-17167 bp Feature: gene Location: 18228-18476 bp Feature: gene Location: 18647-19306 bp Ori: EHG28130.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18650-18857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18650-18857 bp Feature: domain Description: GIIM Note: maturase Location: 18911-19130 bp Feature: domain Description: GIIM Note: maturase Location: 18911-19130 bp Feature: gene Location: 19474-19809 bp Ori: EHG28131.1 Feature: domain Description: PHA02517 Location: 19489-19807 bp Feature: domain Description: PHA02 517 Location: 19489-19807 bp Feature: gene Location: 19867-20259 bp Ori: EHG28132.1 Feature: domain Description: HTH_21 Location: 19993-20152 bp Feature: domain Description: HTH_2 1 Location: 19993-2 0152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thiolase (PRK06158), BglG (COG3711), PTS_EIIA_2 (pfam00359), RVT-GII, INT_RitC_C_like (cd01182), Phage_int_SAM_1 (pfam02899), INT_RitB_C_like (cd00797), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_21 (pfam13276)

Seq: JH376870.1 Clostridium clostridioforme 2_1_49FAA genomic scaffold supercont1.1, whole genome shotgun sequence (1310576 bp)
Overview 1 RT 1: 132036-140509 bp 2 RT 2: 860483-864349 bp Neighborhood of RT #1 [132036, 140523] RVT-GII recomb_XerD HicB bPH_2 RVT-GII InsE PHA02517 Neighborhood of RT #2 [860483, 864543] Avd_like RVT-DGRs YcgL Feature: gene Location: 132036-132134 bp Feature: gene Location: 132100-132348 bp Feature: gene Location: 132716-132970 bp Ori: EHG34153.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132719-132899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 2719-13 2899 bp Feature: gene Location: 133021-133349 bp Feature: gene Location: 134599-134997 bp Ori: EHG34131.1 Feature: domain Description: recomb_XerD Location: 134620-134941 bp Feature: domain Description: recomb_XerD Location: 13 4620-13 4941 bp Feature: gene Location: 136627-136977 bp Ori: EHG34136.1 Feature: domain Description: HicB Location: 136636-136957 bp Feature: domain Description: HicB Location: 13 663 6-13 6957 bp Feature: gene Location: 137299-137730 bp Ori: EHG34137.1 Feature: domain Description: bPH_2 Location: 137371-137596 bp Feature: domain Description: bPH_2 Location: 13 73 71-13 7596 bp Feature: gene Location: 138738-139220 bp Ori: EHG34092.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138948-139206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 8948-13 9206 bp Feature: gene Location: 139286-139618 bp Ori: EHG34093.1 Feature: domain Description: InsE Location: 139295-139604 bp Feature: domain Description: InsE Location: 13 9295-13 9604 bp Feature: gene Location: 139615-140523 bp Ori: EHG34094.1 Feature: domain Description: PHA02517 Location: 139687-140509 bp Feature: domain Description: PHA02517 Location: 13 9687-140509 bp Feature: gene Location: 860483-861247 bp Feature: gene Location: 861347-861709 bp Ori: EHG33234.1 Feature: domain Description: Avd_like Location: 861368-861695 bp Feature: domain Description: Avd_like Location: 8613 68-861695 bp Feature: gene Location: 861936-862973 bp Ori: EHG33235.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 862143-862779 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 862143 -862779 bp Feature: gene Location: 863010-863189 bp Feature: gene Location: 863515-864543 bp Ori: EHG33237.1 Feature: domain Description: YcgL Location: 863575-864349 bp Feature: domain Description: YcgL Location: 863 575-8643 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, recomb_XerD (TIGR02225), HicB (pfam05534), bPH_2 (pfam03703), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Avd_like (cd16376), RVT-DGRs, YcgL (pfam05166)

Seq: JH376897.1 Clostridium clostridioforme 2_1_49FAA genomic scaffold supercont1.28, whole genome shotgun sequence (2521 bp)
Overview 1 RT 1: 580-2362 bp Neighborhood of RT #1 [580, 2397] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 580-2397 bp Ori: EHG25174.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 844-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 4 -1663 bp Feature: domain Description: Intron_maturas2 Location: 1735-2038 bp Feature: domain Description: Intron_maturas2 Location: 1735-2038 bp Feature: domain Description: HNHc Note: nucleases Location: 2218-2362 bp Feature: domain Description: HNHc Note: nucleases Location: 2218-2362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JH376888.1 Clostridium clostridioforme 2_1_49FAA genomic scaffold supercont1.19, whole genome shotgun sequence (28017 bp)
Overview 1 RT 1: 973-4914 bp Neighborhood of RT #1 [973, 4914] COG3943 RVT-Retrons Feature: gene Location: 973-1995 bp Ori: EHG25547.1 Feature: domain Description: COG3943 Location: 991-1960 bp Feature: domain Description: COG3943 Location: 991-1960 bp Feature: gene Location: 2088-4067 bp Ori: EHG25548.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3225-3789 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3225 -3789 bp Feature: gene Location: 4779-4914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons

Seq: JH376874.1 Clostridium clostridioforme 2_1_49FAA genomic scaffold supercont1.5, whole genome shotgun sequence (313771 bp)
Overview 1 RT 1: 117236-121987 bp Neighborhood of RT #1 [117236, 122016] VirD4 KOG4768 RVT-GII DUF3801 Feature: gene Location: 117236-118558 bp Ori: EHG29700.1 Feature: domain Description: VirD4 Location: 117260-118409 bp Feature: domain Description: VirD4 Location: 11726 0-118409 bp Feature: gene Location: 118667-119377 bp Ori: EHG29701.1 Feature: domain Description: KOG4768 Location: 118733-119366 bp Feature: domain Description: KOG476 8 Location: 118733-11936 6 bp Feature: gene Location: 119392-120483 bp Ori: EHG29702.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119656-120433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1196 56 -120433 bp Feature: gene Location: 121043-121543 bp Feature: gene Location: 121540-122016 bp Ori: EHG29704.1 Feature: domain Description: DUF3801 Location: 121606-121987 bp Feature: domain Description: DUF3801 Location: 1216 06 -121987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII, DUF3801 (pfam12687)

Seq: JH376881.1 Clostridium clostridioforme 2_1_49FAA genomic scaffold supercont1.12, whole genome shotgun sequence (79205 bp)
Overview 1 RT 1: 1-2384 bp 2 RT 2: 31680-36435 bp Neighborhood of RT #1 [1, 2384] RVT-GII HNHc Neighborhood of RT #2 [31680, 36500] YafY UppP RVT-GII GIIM sigma70-ECF HTH_17 Feature: gene Location: 1-115 bp Feature: gene Location: 81-1424 bp Ori: EHG26902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102-594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102-594 bp Feature: domain Description: HNHc Note: nucleases Location: 1176-1314 bp Feature: domain Description: HNHc Note: nucleases Location: 117 6-1314 bp Feature: gene Location: 1758-1987 bp Feature: gene Location: 2169-2384 bp Feature: gene Location: 31680-32252 bp Ori: EHG26751.1 Feature: domain Description: YafY Location: 31686-32244 bp Feature: domain Description: YafY Location: 31686-32244 bp Feature: gene Location: 32560-33180 bp Ori: EHG26752.1 Feature: domain Description: UppP Location: 32602-33175 bp Feature: domain Description: UppP Location: 32602-3317 5 bp Feature: gene Location: 33757-35148 bp Ori: EHG26753.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34072-34696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3407 2-34696 bp Feature: domain Description: GIIM Note: maturase Location: 34753-34966 bp Feature: domain Description: GIIM Note: maturase Location: 347 53-34966 bp Feature: gene Location: 35320-35790 bp Ori: EHG26754.1 Feature: domain Description: sigma70-ECF Location: 35596-35782 bp Feature: domain Description: sigma7 0-ECF Location: 35596-357 82 bp Feature: gene Location: 36270-36500 bp Ori: EHG26755.1 Feature: domain Description: HTH_17 Location: 36285-36435 bp Feature: domain Description: HTH_17 Location: 36285-36435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), YafY (COG2378), UppP (COG1968), GIIM (pfam08388), sigma70-ECF (TIGR02937), HTH_17 (pfam12728)

Seq: JH376875.1 Clostridium clostridioforme 2_1_49FAA genomic scaffold supercont1.6, whole genome shotgun sequence (276472 bp)
Overview 1 RT 1: 207238-213153 bp Neighborhood of RT #1 [207238, 213164] group_II_RT_mat RVT-GII GIIM pcrA pcrA Feature: gene Location: 207238-207558 bp Feature: gene Location: 207740-207946 bp Ori: EHG29092.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 207776-207938 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 207776-207938 bp Feature: gene Location: 208535-209161 bp Ori: EHG29093.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208541-208706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208 541-208 706 bp Feature: domain Description: GIIM Note: maturase Location: 208769-208997 bp Feature: domain Description: GIIM Note: maturase Location: 208 769-208 997 bp Feature: gene Location: 210299-210613 bp Feature: gene Location: 210822-213164 bp Ori: EHG28906.1 Feature: domain Description: pcrA Location: 210837-212745 bp Feature: domain Description: pcrA Location: 2108 37-212745 bp Feature: domain Description: pcrA Location: 212991-213153 bp Feature: domain Description: pcrA Location: 212991-213153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), pcrA (TIGR01073)

Seq: JH376912.1 Clostridium clostridioforme 2_1_49FAA genomic scaffold supercont1.43, whole genome shotgun sequence (1349 bp)
Overview 1 RT 1: 7-577 bp Neighborhood of RT #1 [7, 603] RVT-GII Feature: gene Location: 7-603 bp Ori: EHG24358.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340-577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340-577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JH376905.1 Clostridium clostridioforme 2_1_49FAA genomic scaffold supercont1.36, whole genome shotgun sequence (1726 bp)
Overview 1 RT 1: 744-1473 bp Neighborhood of RT #1 [744, 1637] RVT-GII GIIM Feature: gene Location: 744-1637 bp Ori: EHG24690.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750-1182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750-1182 bp Feature: domain Description: GIIM Note: maturase Location: 1245-1473 bp Feature: domain Description: GIIM Note: maturase Location: 1245-1473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JH376921.1 Clostridium clostridioforme 2_1_49FAA genomic scaffold supercont1.52, whole genome shotgun sequence (777 bp)
Overview 1 RT 1: 1-769 bp Neighborhood of RT #1 [1, 777] RVT-GII Feature: gene Location: 1-777 bp Ori: EHG23682.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163-769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163-769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII