myRT

myRT report for GCA_000235065.1_Esch_coli_11-4632_C4_V2

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Seq: JH377992.1 Escherichia coli O104:H4 str. 11-4632 C4 genomic scaffold supercont1.4, whole genome shotgun sequence (547882 bp)
Overview 1 RT 1: 11201-16449 bp 2 RT 2: 208887-214016 bp Neighborhood of RT #1 [11201, 16451] TonB-siderophor PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [208887, 214018] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 11201-13396 bp Feature: domain Description: TonB-siderophor Location: 11333-13394 bp Feature: domain Description: TonB-siderophor Location: 1 1 333-1 3394 bp Feature: gene Location: 13798-14169 bp Feature: domain Description: PHA02517 Location: 13801-14167 bp Feature: domain Description: PHA0251 7 Location: 1 3801 -1 41 67 bp Feature: gene Location: 14361-15689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14439-15171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4439-1 51 71 bp Feature: domain Description: GIIM Note: maturase Location: 15246-15444 bp Feature: domain Description: GIIM Note: maturase Location: 1 5246-1 5444 bp Feature: gene Location: 15790-16125 bp Feature: domain Description: PHA02517 Location: 15850-16123 bp Feature: domain Description: PHA0251 7 Location: 1 5850-1 61 23 bp Feature: gene Location: 16125-16451 bp Feature: domain Description: InsE Location: 16128-16449 bp Feature: domain Description: InsE Location: 1 61 28-1 6449 bp Feature: gene Location: 208887-209189 bp Feature: domain Description: InsE Location: 208926-209175 bp Feature: domain Description: InsE Location: 208926-2091 75 bp Feature: gene Location: 209431-209670 bp Feature: domain Description: PHA02517 Location: 209434-209605 bp Feature: domain Description: PHA0251 7 Location: 209434-209605 bp Feature: gene Location: 210262-211785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210535-211267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 0535-21 1 267 bp Feature: domain Description: GIIM Note: maturase Location: 211342-211540 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 342-21 1 540 bp Feature: gene Location: 212436-212693 bp Feature: gene Location: 213251-214018 bp Feature: domain Description: fecE Location: 213254-214016 bp Feature: domain Description: fecE Location: 21 3254-21 401 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TonB-siderophor (TIGR01783), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), fecE (PRK11231)

Seq: JH377990.1 Escherichia coli O104:H4 str. 11-4632 C4 genomic scaffold supercont1.2, whole genome shotgun sequence (1250418 bp)
Overview 1 RT 1: 1241145-1249811 bp Neighborhood of RT #1 [1241145, 1249813] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 Peptidase_S6 autotrans_barl Feature: gene Location: 1241145-1242296 bp Feature: domain Description: HTH_38 Location: 1241154-1241268 bp Feature: domain Description: HTH_38 Location: 12 41154-12 412 68 bp Feature: domain Description: Tra8 Location: 1241304-1242285 bp Feature: domain Description: Tra8 Location: 12 41304-12 42 2 85 bp Feature: gene Location: 1242613-1242852 bp Feature: domain Description: PHA02517 Location: 1242616-1242787 bp Feature: domain Description: PHA02 517 Location: 12 42 616-12 42 787 bp Feature: gene Location: 1243444-1244967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1243717-1244449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 43717-12 44449 bp Feature: domain Description: GIIM Note: maturase Location: 1244524-1244722 bp Feature: domain Description: GIIM Note: maturase Location: 12 4452 4-12 4472 2 bp Feature: gene Location: 1245144-1245530 bp Feature: domain Description: PHA02517 Location: 1245147-1245528 bp Feature: domain Description: PHA02 517 Location: 12 45147-12 4552 8 bp Feature: gene Location: 1245695-1249813 bp Feature: domain Description: Peptidase_S6 Location: 1245848-1248020 bp Feature: domain Description: Peptidase_S6 Location: 12 45848-12 4802 0 bp Feature: domain Description: autotrans_barl Location: 1248584-1249811 bp Feature: domain Description: autotrans_barl Location: 12 48584-12 49811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)