myRT

myRT report for GCA_000235225.1_Esch_coli_09-7901_V2

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Seq: JH378063.1 Escherichia coli O104:H4 str. 09-7901 genomic scaffold supercont1.2, whole genome shotgun sequence (2141471 bp)
Overview 1 RT 1: 5171-10031 bp 2 RT 2: 203445-208574 bp Neighborhood of RT #1 [5171, 10033] PHA02517 COG3547 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [203445, 208576] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 5171-5377 bp Feature: domain Description: PHA02517 Location: 5174-5366 bp Feature: domain Description: PHA0251 7 Location: 51 74-5366 bp Feature: gene Location: 5495-6571 bp Feature: domain Description: COG3547 Location: 5534-6455 bp Feature: domain Description: COG3547 Location: 5534-6455 bp Feature: gene Location: 7113-8636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7386-8118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7386-81 1 8 bp Feature: domain Description: GIIM Note: maturase Location: 8193-8391 bp Feature: domain Description: GIIM Note: maturase Location: 81 93-8391 bp Feature: gene Location: 9228-9707 bp Feature: domain Description: PHA02517 Location: 9288-9642 bp Feature: domain Description: PHA0251 7 Location: 9288-9642 bp Feature: gene Location: 9707-10033 bp Feature: domain Description: InsE Location: 9710-10031 bp Feature: domain Description: InsE Location: 971 0-1 0031 bp Feature: gene Location: 203445-203747 bp Feature: domain Description: InsE Location: 203484-203733 bp Feature: domain Description: InsE Location: 203484-203733 bp Feature: gene Location: 203989-204228 bp Feature: domain Description: PHA02517 Location: 203992-204163 bp Feature: domain Description: PHA0251 7 Location: 203992-2041 63 bp Feature: gene Location: 204820-206343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205093-205825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205093-205825 bp Feature: domain Description: GIIM Note: maturase Location: 205900-206098 bp Feature: domain Description: GIIM Note: maturase Location: 205900-206098 bp Feature: gene Location: 206994-207251 bp Feature: gene Location: 207809-208576 bp Feature: domain Description: fecE Location: 207812-208574 bp Feature: domain Description: fecE Location: 20781 2-208574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), InsE (COG2963), fecE (PRK11231)

Seq: JH378069.1 Escherichia coli O104:H4 str. 09-7901 genomic scaffold supercont1.8, whole genome shotgun sequence (18396 bp)
Overview 1 RT 1: 494-6761 bp Neighborhood of RT #1 [494, 6889] COG4584 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 494-1618 bp Feature: domain Description: COG4584 Location: 497-1367 bp Feature: domain Description: COG4584 Location: 497-1367 bp Feature: gene Location: 1754-2290 bp Feature: gene Location: 3621-5144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3894-4626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3894-462 6 bp Feature: domain Description: GIIM Note: maturase Location: 4701-4899 bp Feature: domain Description: GIIM Note: maturase Location: 4701-4899 bp Feature: gene Location: 5336-5707 bp Feature: domain Description: PHA02517 Location: 5339-5705 bp Feature: domain Description: PHA02 517 Location: 5339-5705 bp Feature: gene Location: 5756-6889 bp Feature: domain Description: COG3547 Location: 5783-6761 bp Feature: domain Description: COG3547 Location: 5783-6761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), COG3547 (Transposase )

Seq: JH378066.1 Escherichia coli O104:H4 str. 09-7901 genomic scaffold supercont1.5, whole genome shotgun sequence (945789 bp)
Overview 1 RT 1: 6866-13746 bp Neighborhood of RT #1 [6866, 13799] PHA02517 RVT-GII GIIM PHA02517 VI_ClpV1 Feature: gene Location: 6866-7015 bp Feature: gene Location: 7572-7958 bp Feature: domain Description: PHA02517 Location: 7575-7956 bp Feature: domain Description: PHA02517 Location: 7575-7956 bp Feature: gene Location: 8135-9658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8408-9140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8408-9140 bp Feature: domain Description: GIIM Note: maturase Location: 9215-9413 bp Feature: domain Description: GIIM Note: maturase Location: 9215-9413 bp Feature: gene Location: 10250-10813 bp Feature: domain Description: PHA02517 Location: 10394-10748 bp Feature: domain Description: PHA02517 Location: 103 94-10748 bp Feature: gene Location: 11250-13799 bp Feature: domain Description: VI_ClpV1 Location: 11286-13746 bp Feature: domain Description: VI_ClpV1 Location: 11286-13 746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), VI_ClpV1 (TIGR03345), RVT-GII, GIIM (pfam08388)

Seq: JH378070.1 Escherichia coli O104:H4 str. 09-7901 genomic scaffold supercont1.9, whole genome shotgun sequence (71556 bp)
Overview 1 RT 1: 33001-36700 bp 2 RT 2: 41173-46847 bp Neighborhood of RT #1 [33001, 36705] TnpB_IS66 COG3436 RVT-GII GIIM PinE Neighborhood of RT #2 [41173, 46849] LZ_Tnp_IS66 DDE_Tnp_IS66 RVT-GII GIIM HNHc PRK13704 PRK13720 Feature: gene Location: 33001-33351 bp Feature: domain Description: TnpB_IS66 Location: 33028-33319 bp Feature: domain Description: TnpB_IS66 Location: 33028-33319 bp Feature: gene Location: 33382-34308 bp Feature: domain Description: COG3436 Location: 33718-34198 bp Feature: domain Description: COG34 36 Location: 33718-34 198 bp Feature: gene Location: 34398-35438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34407-35025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 4 07-35025 bp Feature: domain Description: GIIM Note: maturase Location: 35073-35304 bp Feature: domain Description: GIIM Note: maturase Location: 35073-35304 bp Feature: gene Location: 35647-36048 bp Feature: gene Location: 36148-36705 bp Feature: domain Description: PinE Location: 36151-36700 bp Feature: domain Description: PinE Location: 36151-36700 bp Feature: gene Location: 41173-41433 bp Feature: domain Description: LZ_Tnp_IS66 Location: 41299-41407 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4 1299-4 14 07 bp Feature: gene Location: 41758-42591 bp Feature: domain Description: DDE_Tnp_IS66 Location: 41764-42529 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4 1764 -4 2529 bp Feature: gene Location: 43046-44320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43049-43631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 304 9-4 3631 bp Feature: domain Description: GIIM Note: maturase Location: 43682-43916 bp Feature: domain Description: GIIM Note: maturase Location: 4 3682-4 3916 bp Feature: domain Description: HNHc Note: nucleases Location: 44126-44285 bp Feature: domain Description: HNHc Note: nucleases Location: 4 4 126-4 4 285 bp Feature: gene Location: 45882-46415 bp Feature: domain Description: PRK13704 Location: 45885-46410 bp Feature: domain Description: PRK13704 Location: 4 5885-4 64 10 bp Feature: gene Location: 46637-46849 bp Feature: domain Description: PRK13720 Location: 46640-46847 bp Feature: domain Description: PRK13720 Location: 4 664 0-4 684 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), COG3436 (Transposase ), RVT-GII, GIIM (pfam08388), PinE (COG1961), LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), HNHc (smart00507), PRK13704 (plasmid SOS inhibition protein A; Provisional), PRK13720 (modulator of post-segregation killing protein; Provisional)

Seq: JH378068.1 Escherichia coli O104:H4 str. 09-7901 genomic scaffold supercont1.7, whole genome shotgun sequence (335285 bp)
Overview 1 RT 1: 326929-334693 bp Neighborhood of RT #1 [326929, 334695] InsE PHA02517 RVT-GII GIIM PHA02517 Peptidase_S6 autotrans_barl Feature: gene Location: 326929-327255 bp Feature: domain Description: InsE Location: 326932-327253 bp Feature: domain Description: InsE Location: 326932-32725 3 bp Feature: gene Location: 327255-327734 bp Feature: domain Description: PHA02517 Location: 327315-327669 bp Feature: domain Description: PHA025 17 Location: 327315 -327669 bp Feature: gene Location: 328326-329849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328599-329331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3285 99-329331 bp Feature: domain Description: GIIM Note: maturase Location: 329406-329604 bp Feature: domain Description: GIIM Note: maturase Location: 329406-329604 bp Feature: gene Location: 330026-330412 bp Feature: domain Description: PHA02517 Location: 330029-330410 bp Feature: domain Description: PHA025 17 Location: 330029-330410 bp Feature: gene Location: 330577-334695 bp Feature: domain Description: Peptidase_S6 Location: 330730-332902 bp Feature: domain Description: Peptidase_S6 Location: 330730-332902 bp Feature: domain Description: autotrans_barl Location: 333466-334693 bp Feature: domain Description: autotrans_barl Location: 333466-334693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)