myRT

myRT report for GCA_000235505.1_Clos_hath_WAL_18680_V1

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Seq: JH379027.1 Clostridium hathewayi WAL-18680 genomic scaffold supercont1.1, whole genome shotgun sequence (3507896 bp)
Overview 1 RT 1: 106470-111902 bp 2 RT 2: 1571829-1576125 bp 3 RT 3: 3297330-3299232 bp Neighborhood of RT #1 [106470, 112231] TadB CpaF RVT-GII HNHc FlhG Neighborhood of RT #2 [1571829, 1576125] ClpA RVT-UG14 Neighborhood of RT #3 [3297330, 3299237] Phage_holin_5_2 RVT-DGRs Phage_XkdX Feature: gene Location: 106470-107402 bp Ori: EHI61658.1 Feature: domain Description: TadB Location: 106677-107331 bp Feature: domain Description: TadB Location: 1 06677-1 07331 bp Feature: gene Location: 107403-108434 bp Ori: EHI61659.1 Feature: domain Description: CpaF Location: 107439-108279 bp Feature: domain Description: CpaF Location: 1 07439-1 08279 bp Feature: gene Location: 108558-110384 bp Ori: EHI61660.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108873-109572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 08873-1 09572 bp Feature: domain Description: HNHc Note: nucleases Location: 110121-110262 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 01 21 -1 1 0262 bp Feature: gene Location: 111118-111444 bp Feature: gene Location: 111428-112231 bp Ori: EHI61662.1 Feature: domain Description: FlhG Location: 111431-111902 bp Feature: domain Description: FlhG Location: 1 1 1 431 -1 1 1 902 bp Feature: gene Location: 1571829-1572632 bp Feature: gene Location: 1572625-1573737 bp Ori: EHI60594.1 Feature: domain Description: ClpA Location: 1572976-1573459 bp Feature: domain Description: ClpA Location: 1 572976-1 573459 bp Feature: gene Location: 1573807-1574445 bp Ori: EHI60595.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 1574158-1574431 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 1 5741 58-1 574431 bp Feature: gene Location: 1574445-1575161 bp Feature: gene Location: 1575847-1576125 bp Feature: gene Location: 3297330-3297626 bp Ori: EHI59007.1 Feature: domain Description: Phage_holin_5_2 Location: 3297378-3297609 bp Feature: domain Description: Phage_holin_5_2 Location: 3297378-3297609 bp Feature: gene Location: 3297638-3297961 bp Feature: gene Location: 3297979-3298410 bp Ori: EHI59009.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3297982-3298126 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3297982-32981 26 bp Feature: gene Location: 3298612-3299097 bp Feature: gene Location: 3299094-3299237 bp Ori: EHI59011.1 Feature: domain Description: Phage_XkdX Location: 3299115-3299232 bp Feature: domain Description: Phage_XkdX Location: 32991 1 5-3299232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TadB (COG4965), CpaF (COG4962), RVT-GII, HNHc (smart00507), FlhG (COG0455), ClpA (TIGR02639), RVT-UG14, Phage_holin_5_2 (pfam16079), RVT-DGRs, Phage_XkdX (pfam09693)