myRT

myRT report for GCA_000235885.1_ASM23588v1

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Seq: JH379411.1 Prevotella stercorea DSM 18206 genomic scaffold Scfld400, whole genome shotgun sequence (48887 bp)
Overview 1 RT 1: 40370-46185 bp Neighborhood of RT #1 [40370, 46185] VirE_N RVT-UG28b DUF262 Feature: gene Location: 40370-40657 bp Feature: gene Location: 41025-42035 bp Ori: EHJ40709.1 Feature: domain Description: VirE_N Location: 41214-41589 bp Feature: domain Description: VirE_N Location: 41 21 4-41 589 bp Feature: gene Location: 42202-43941 bp Ori: EHJ40710.1 Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 42619-43360 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 4261 9-43360 bp Feature: gene Location: 43968-45230 bp Ori: EHJ40711.1 Feature: domain Description: DUF262 Location: 44034-44607 bp Feature: domain Description: DUF262 Location: 44034-44607 bp Feature: gene Location: 45220-46185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirE_N (pfam08800), RVT-UG28b, DUF262 (pfam03235)

Seq: JH379375.1 Prevotella stercorea DSM 18206 genomic scaffold Scfld115, whole genome shotgun sequence (106628 bp)
Overview 1 RT 1: 15146-17822 bp 2 RT 2: 82404-90705 bp Neighborhood of RT #1 [15146, 17822] RVT_N RVT-GII GIIM Neighborhood of RT #2 [82404, 90782] SMC_prok_B Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G DUF4133 Feature: gene Location: 15146-15292 bp Feature: gene Location: 15299-15529 bp Feature: gene Location: 15615-17117 bp Ori: EHJ41665.1 Feature: domain Description: RVT_N Location: 15681-15924 bp Feature: domain Description: RVT_N Location: 15681-1592 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15969-16611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15969-16611 bp Feature: domain Description: GIIM Note: maturase Location: 16668-16899 bp Feature: domain Description: GIIM Note: maturase Location: 16668-16899 bp Feature: gene Location: 17474-17620 bp Feature: gene Location: 17679-17822 bp Feature: gene Location: 82404-84914 bp Ori: EHJ41758.1 Feature: domain Description: SMC_prok_B Location: 83922-84234 bp Feature: domain Description: SMC_prok_B Location: 8392 2 -842 34 bp Feature: gene Location: 85165-85710 bp Ori: EHJ41759.1 Feature: domain Description: Bac_Flav_CT_G Location: 85189-85597 bp Feature: domain Description: Bac_Flav_CT_G Location: 85189-85597 bp Feature: gene Location: 85788-87599 bp Ori: EHJ41760.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86052-86874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86052 -86874 bp Feature: domain Description: Intron_maturas2 Location: 86949-87276 bp Feature: domain Description: Intron_maturas2 Location: 86949-872 76 bp Feature: domain Description: HNHc Note: nucleases Location: 87420-87570 bp Feature: domain Description: HNHc Note: nucleases Location: 8742 0-87570 bp Feature: gene Location: 88147-90360 bp Ori: EHJ41761.1 Feature: domain Description: Bac_Flav_CT_G Location: 88297-89806 bp Feature: domain Description: Bac_Flav_CT_G Location: 882 97-89806 bp Feature: domain Description: Bac_Flav_CT_G Location: 89878-90346 bp Feature: domain Description: Bac_Flav_CT_G Location: 89878-90346 bp Feature: gene Location: 90483-90782 bp Ori: EHJ41762.1 Feature: domain Description: DUF4133 Location: 90525-90705 bp Feature: domain Description: DUF4133 Location: 9052 5-90705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SMC_prok_B (TIGR02168), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)