myRT

myRT report for GCA_000235975.2_ASM23597v1

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Seq: AGFM01000122.1 Novosphingobium pentaromativorans US6-1 plasmid pLA1, whole genome shotgun sequence (188476 bp)
Overview 1 RT 1: 607-5122 bp 2 RT 2: 46903-50981 bp Neighborhood of RT #1 [607, 5151] RVT-GII GIIM TrbC_Ftype PRK12355 Neighborhood of RT #2 [46903, 50981] RVT-GII Intron_maturas2 Feature: gene Location: 607-2229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946-1687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946-1 687 bp Feature: domain Description: GIIM Note: maturase Location: 1765-1975 bp Feature: domain Description: GIIM Note: maturase Location: 1 765-1 975 bp Feature: gene Location: 2226-3014 bp Feature: domain Description: TrbC_Ftype Location: 2613-2946 bp Feature: domain Description: TrbC_Ftype Location: 261 3-2946 bp Feature: gene Location: 3016-5151 bp Feature: domain Description: PRK12355 Location: 3232-5122 bp Feature: domain Description: PRK1 2355 Location: 3232-51 22 bp Feature: gene Location: 46903-47136 bp Feature: gene Location: 47160-47486 bp Feature: gene Location: 47600-49294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47720-48557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47720-48557 bp Feature: domain Description: Intron_maturas2 Location: 48644-48926 bp Feature: domain Description: Intron_maturas2 Location: 48644-48926 bp Feature: gene Location: 50027-50314 bp Feature: gene Location: 50325-50981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbC_Ftype (TIGR02742), PRK12355 (type-F conjugative transfer system mating-pair stabilization protein TraN), RVT-GII, GIIM (pfam08388), Intron_maturas2 (pfam01348)

Seq: AGFM01000034.1 Novosphingobium pentaromativorans US6-1 contig00034, whole genome shotgun sequence (17201 bp)
Overview 1 RT 1: 9935-14801 bp Neighborhood of RT #1 [9935, 14801] xerC xerC xerC RVT-GII Intron_maturas2 HNHc Feature: gene Location: 9935-11263 bp Feature: domain Description: xerC Location: 9968-10700 bp Feature: domain Description: xerC Location: 9968-10700 bp Feature: domain Description: xerC Location: 10889-11030 bp Feature: domain Description: xerC Location: 10889-11030 bp Feature: domain Description: xerC Location: 11120-11195 bp Feature: domain Description: xerC Location: 1112 0-11195 bp Feature: gene Location: 11476-11904 bp Feature: gene Location: 12491-14338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12761-13592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 761-13592 bp Feature: domain Description: Intron_maturas2 Location: 13676-13958 bp Feature: domain Description: Intron_maturas2 Location: 13676-13958 bp Feature: domain Description: HNHc Note: nucleases Location: 14138-14282 bp Feature: domain Description: HNHc Note: nucleases Location: 14138-142 82 bp Feature: gene Location: 14415-14546 bp Feature: gene Location: 14505-14801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), xerC (PRK01287)