myRT

myRT report for GCA_000238635.1_Subdol_sp_4_3_54A2FAA_V1

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Seq: JH414703.1 Subdoligranulum sp. 4_3_54A2FAA genomic scaffold supercont1.6, whole genome shotgun sequence (127092 bp)
Overview 1 RT 1: 48703-53635 bp Neighborhood of RT #1 [48703, 54171] RVT-Retrons Bro-N dinD Ser_Recombinase Recombinase Zn_ribbon_recom Feature: gene Location: 48703-48861 bp Feature: gene Location: 49488-49679 bp Feature: gene Location: 50078-51109 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50237-50774 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50237-50774 bp Feature: gene Location: 51305-52180 bp Feature: domain Description: Bro-N Location: 51344-51635 bp Feature: domain Description: Bro-N Location: 51 344-51 635 bp Feature: domain Description: dinD Location: 51701-51983 bp Feature: domain Description: dinD Location: 51 701 -51 983 bp Feature: gene Location: 52441-54171 bp Feature: domain Description: Ser_Recombinase Location: 52573-52978 bp Feature: domain Description: Ser_Recombinase Location: 52573-52978 bp Feature: domain Description: Recombinase Location: 53107-53371 bp Feature: domain Description: Recombinase Location: 531 07-53371 bp Feature: domain Description: Zn_ribbon_recom Location: 53431-53635 bp Feature: domain Description: Zn_ribbon_recom Location: 53431 -53635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Bro-N (smart01040), dinD (PRK11525), Ser_Recombinase (cl02788), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: JH414706.1 Subdoligranulum sp. 4_3_54A2FAA genomic scaffold supercont1.9, whole genome shotgun sequence (1729404 bp)
Overview 1 RT 1: 693026-697869 bp Neighborhood of RT #1 [693026, 697869] RVT-DGRs Feature: gene Location: 693026-694033 bp Feature: gene Location: 694055-695908 bp Feature: gene Location: 696260-697420 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 696470-697139 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 696470-697139 bp Feature: gene Location: 697368-697712 bp Feature: gene Location: 697726-697869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JH414700.1 Subdoligranulum sp. 4_3_54A2FAA genomic scaffold supercont1.3, whole genome shotgun sequence (325285 bp)
Overview 1 RT 1: 310008-314193 bp Neighborhood of RT #1 [310008, 314193] HTH_XRE RVT-GII Feature: gene Location: 310008-310196 bp Feature: gene Location: 310680-311486 bp Feature: domain Description: HTH_XRE Location: 310707-310878 bp Feature: domain Description: HTH_XRE Location: 3 10707-3 10878 bp Feature: gene Location: 311662-312957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311917-312607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 11917-3 12607 bp Feature: gene Location: 313451-313975 bp Feature: gene Location: 314029-314193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII

Seq: JH414698.1 Subdoligranulum sp. 4_3_54A2FAA genomic scaffold supercont1.1, whole genome shotgun sequence (1096723 bp)
Overview 1 RT 1: 394476-400508 bp Neighborhood of RT #1 [394476, 400525] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII Intron_maturas2 HNHc VirD4 VirD4 DUF3801 Feature: gene Location: 394476-396356 bp Feature: domain Description: SR_TndX_transposase Location: 394500-394908 bp Feature: domain Description: SR_TndX_transposase Location: 394 500-394 908 bp Feature: domain Description: Recombinase Location: 395007-395364 bp Feature: domain Description: Recombinase Location: 395007-395364 bp Feature: domain Description: Zn_ribbon_recom Location: 395412-395595 bp Feature: domain Description: Zn_ribbon_recom Location: 3954 12-395595 bp Feature: domain Description: DUF4368 Location: 395880-396066 bp Feature: domain Description: DUF4 368 Location: 395880-396066 bp Feature: gene Location: 396430-396756 bp Feature: gene Location: 396828-398618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397101-397911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 397101-397911 bp Feature: domain Description: Intron_maturas2 Location: 398088-398280 bp Feature: domain Description: Intron_maturas2 Location: 398088-398280 bp Feature: domain Description: HNHc Note: nucleases Location: 398454-398598 bp Feature: domain Description: HNHc Note: nucleases Location: 3984 54 -398598 bp Feature: gene Location: 399246-400028 bp Feature: domain Description: VirD4 Location: 399489-399813 bp Feature: domain Description: VirD4 Location: 3994 89-399813 bp Feature: domain Description: VirD4 Location: 399891-400005 bp Feature: domain Description: VirD4 Location: 399891-4 00005 bp Feature: gene Location: 400025-400525 bp Feature: domain Description: DUF3801 Location: 400106-400508 bp Feature: domain Description: DUF3801 Location: 4 00106-4 00508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505), DUF3801 (pfam12687)