myRT

myRT report for GCA_000241185.2_PspBSi20495_1.0

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Seq: BADY01000010.1 Pseudoalteromonas sp. BSi20495 DNA, contig: CTG010, whole genome shotgun sequence (151433 bp)
Overview 1 RT 1: 12549-19790 bp Neighborhood of RT #1 [12549, 19795] GST_N_Omega_like GST_C_5 PrtC DUF3656 PrtC RVT-Retrons PRK10604 PRK10604 Feature: gene Location: 12549-13208 bp Feature: domain Description: GST_N_Omega_like Location: 12561-12771 bp Feature: domain Description: GST_N_Omega_like Location: 1 2561 -1 2771 bp Feature: domain Description: GST_C_5 Location: 12813-13146 bp Feature: domain Description: GST_C_5 Location: 1 281 3-1 31 46 bp Feature: gene Location: 13222-15513 bp Feature: domain Description: PrtC Location: 13231-14182 bp Feature: domain Description: PrtC Location: 1 3231 -1 41 82 bp Feature: domain Description: DUF3656 Location: 14284-14581 bp Feature: domain Description: DUF3656 Location: 1 4284-1 4581 bp Feature: domain Description: PrtC Location: 14839-15217 bp Feature: domain Description: PrtC Location: 1 4839-1 521 7 bp Feature: gene Location: 16096-17283 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16243-16825 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 6243-1 6825 bp Feature: gene Location: 17273-18010 bp Feature: gene Location: 18191-19795 bp Feature: domain Description: PRK10604 Location: 18197-18566 bp Feature: domain Description: PRK1 0604 Location: 1 81 97-1 8566 bp Feature: domain Description: PRK10604 Location: 18605-19790 bp Feature: domain Description: PRK1 0604 Location: 1 8605-1 9790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GST_N_Omega_like (cd03060), GST_C_5 (pfam16865), PrtC (COG0826), DUF3656 (pfam12392), RVT-Retrons, PRK10604 (sensor protein RstB; Provisional)

Seq: BADY01000159.1 Pseudoalteromonas sp. BSi20495 DNA, contig: CTG159, whole genome shotgun sequence (103875 bp)
Overview 1 RT 1: 3508-9534 bp Neighborhood of RT #1 [3508, 9539] TIGR02646 COG3950 RVT-Retrons groEL groES Feature: gene Location: 3508-4248 bp Feature: domain Description: TIGR02646 Location: 3595-4072 bp Feature: domain Description: TIGR02 646 Location: 3595-4072 bp Feature: gene Location: 4245-5891 bp Feature: domain Description: COG3950 Location: 4455-5778 bp Feature: domain Description: COG3950 Location: 4455-5778 bp Feature: gene Location: 5884-6834 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5986-6583 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5986-6583 bp Feature: gene Location: 7554-9203 bp Feature: domain Description: groEL Location: 7560-9183 bp Feature: domain Description: groEL Location: 7560-9183 bp Feature: gene Location: 9252-9539 bp Feature: domain Description: groES Location: 9255-9534 bp Feature: domain Description: groES Location: 92 55-9534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, groEL (PRK12852), groES (PRK14533)

Seq: BADY01000111.1 Pseudoalteromonas sp. BSi20495 DNA, contig: CTG111, whole genome shotgun sequence (106916 bp)
Overview 1 RT 1: 34001-40231 bp Neighborhood of RT #1 [34001, 40257] DUF772 DDE_Tnp_1_6 RVT-GII GIIM AmpC DUF3658 Feature: gene Location: 34001-34198 bp Feature: gene Location: 34202-35623 bp Feature: domain Description: DUF772 Location: 34367-34574 bp Feature: domain Description: DUF772 Location: 3 43 67-3 4574 bp Feature: domain Description: DDE_Tnp_1_6 Location: 35336-35594 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3 53 3 6-3 5594 bp Feature: gene Location: 36467-37720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36659-37283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6659-3 7283 bp Feature: domain Description: GIIM Note: maturase Location: 37322-37529 bp Feature: domain Description: GIIM Note: maturase Location: 3 73 22-3 7529 bp Feature: gene Location: 37818-39635 bp Feature: domain Description: AmpC Location: 37902-38889 bp Feature: domain Description: AmpC Location: 3 7902-3 8889 bp Feature: gene Location: 39769-40257 bp Feature: domain Description: DUF3658 Location: 40030-40231 bp Feature: domain Description: DUF3 658 Location: 4003 0-4023 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388), AmpC (COG1680), DUF3658 (pfam12395)

Seq: BADY01000026.1 Pseudoalteromonas sp. BSi20495 DNA, contig: CTG026, whole genome shotgun sequence (119221 bp)
Overview 1 RT 1: 42340-47209 bp Neighborhood of RT #1 [42340, 47209] TPR TPR Sulfotransfer_3 YncA RVT-GII GIIM Feature: gene Location: 42340-43920 bp Feature: domain Description: TPR Location: 42370-42619 bp Feature: domain Description: TPR Location: 4 2370-4 2619 bp Feature: domain Description: TPR Location: 42676-43057 bp Feature: domain Description: TPR Location: 4 2676-4 3057 bp Feature: domain Description: Sulfotransfer_3 Location: 43186-43759 bp Feature: domain Description: Sulfotransfer_3 Location: 4 3186-4 3759 bp Feature: gene Location: 44008-44496 bp Feature: domain Description: YncA Location: 44014-44482 bp Feature: domain Description: YncA Location: 4 4 014 -4 4 4 82 bp Feature: gene Location: 44871-45938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44877-45501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 877-4 5501 bp Feature: domain Description: GIIM Note: maturase Location: 45540-45759 bp Feature: domain Description: GIIM Note: maturase Location: 4 554 0-4 5759 bp Feature: gene Location: 46018-46671 bp Feature: gene Location: 47048-47209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), Sulfotransfer_3 (pfam13469), YncA (COG1247), RVT-GII, GIIM (pfam08388)