myRT

myRT report for GCA_000242095.1_Myro_odor_CCUG_12901_V1

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Seq: JH590834.1 Myroides odoratimimus CCUG 12901 genomic scaffold supercont1.1, whole genome shotgun sequence (3471562 bp)
Overview 1 RT 1: 1605877-1612023 bp 2 RT 2: 3227677-3232251 bp Neighborhood of RT #1 [1605877, 1612034] COG3666 DDE_Tnp_1_6 Y1_Tnp RVT-GII GIIM DUF4377 PRK06753 Neighborhood of RT #2 [3227677, 3232251] CitB AbiV_defense RVT-AbiP2 ArdA Feature: gene Location: 1605877-1607436 bp Ori: EHO10979.1 Feature: domain Description: COG3666 Location: 1605901-1606366 bp Feature: domain Description: COG3666 Location: 1 605901 -1 606366 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1607056-1607425 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 607056-1 607425 bp Feature: gene Location: 1607613-1608044 bp Ori: EHO10980.1 Feature: domain Description: Y1_Tnp Location: 1607646-1608000 bp Feature: domain Description: Y1 _Tnp Location: 1 607646-1 608000 bp Feature: gene Location: 1608563-1609954 bp Ori: EHO10981.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1608893-1609511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 608893-1 60951 1 bp Feature: domain Description: GIIM Note: maturase Location: 1609571-1609796 bp Feature: domain Description: GIIM Note: maturase Location: 1 609571 -1 609796 bp Feature: gene Location: 1610088-1610444 bp Ori: EHO10982.1 Feature: domain Description: DUF4377 Location: 1610313-1610430 bp Feature: domain Description: DUF4377 Location: 1 61 031 3-1 61 0430 bp Feature: gene Location: 1610898-1612034 bp Ori: EHO10983.1 Feature: domain Description: PRK06753 Location: 1610910-1612023 bp Feature: domain Description: PRK06753 Location: 1 61 091 0-1 61 2023 bp Feature: gene Location: 3227677-3228057 bp Ori: EHO07011.1 Feature: domain Description: CitB Location: 3227719-3228016 bp Feature: domain Description: CitB Location: 322771 9-322801 6 bp Feature: gene Location: 3228058-3228720 bp Ori: EHO07012.1 Feature: domain Description: AbiV_defense Location: 3228112-3228532 bp Feature: domain Description: AbiV_defense Location: 32281 1 2-3228532 bp Feature: gene Location: 3228757-3230295 bp Ori: EHO07013.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3229210-3229666 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 322921 0-3229666 bp Feature: gene Location: 3230718-3231350 bp Ori: EHO07014.1 Feature: domain Description: ArdA Location: 3230853-3231336 bp Feature: domain Description: ArdA Location: 3230853-3231 336 bp Feature: gene Location: 3232090-3232251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), Y1_Tnp (pfam01797), RVT-GII, GIIM (pfam08388), DUF4377 (pfam14302), PRK06753 (hypothetical protein; Provisional), CitB (TIGR02484), AbiV_defense (TIGR04498), RVT-AbiP2
ArdA (pfam07275)

Seq: JH590835.1 Myroides odoratimimus CCUG 12901 genomic scaffold supercont1.2, whole genome shotgun sequence (594067 bp)
Overview 1 RT 1: 174803-182483 bp Neighborhood of RT #1 [174803, 182488] OMP_RagA_SusC OMP_RagA_SusC RVT-GII GIIM SusD OMP_RagA_SusC Feature: gene Location: 174803-175003 bp Ori: EHO05575.1 Feature: domain Description: OMP_RagA_SusC Location: 174806-174995 bp Feature: domain Description: OMP_RagA_SusC Location: 174806-174995 bp Feature: gene Location: 175079-175669 bp Ori: EHO05576.1 Feature: domain Description: OMP_RagA_SusC Location: 175157-175646 bp Feature: domain Description: OMP_RagA_SusC Location: 175157-175646 bp Feature: gene Location: 175851-177242 bp Ori: EHO05577.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176181-176796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176181-176796 bp Feature: domain Description: GIIM Note: maturase Location: 176859-177084 bp Feature: domain Description: GIIM Note: maturase Location: 176859-177084 bp Feature: gene Location: 177765-179267 bp Ori: EHO05578.1 Feature: domain Description: SusD Location: 177909-179136 bp Feature: domain Description: SusD Location: 177909-179136 bp Feature: gene Location: 179285-182488 bp Ori: EHO05579.1 Feature: domain Description: OMP_RagA_SusC Location: 179366-182483 bp Feature: domain Description: OMP_RagA_SusC Location: 179366-182 483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_RagA_SusC (TIGR04056), RVT-GII, GIIM (pfam08388), SusD (NF033071)