myRT

myRT report for GCA_000242155.1_Lach_bact_7_1_58FAA_V1

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Seq: JH590870.1 Lachnospiraceae bacterium 7_1_58FAA genomic scaffold supercont1.5, whole genome shotgun sequence (303921 bp)
Overview 1 RT 1: 194318-199955 bp Neighborhood of RT #1 [194318, 199955] Big_3 Big_3 RVT-DGRs Feature: gene Location: 194318-194707 bp Feature: gene Location: 194700-197438 bp Feature: domain Description: Big_3 Location: 194796-194997 bp Feature: domain Description: Big_3 Location: 1 94796-1 94997 bp Feature: domain Description: Big_3 Location: 195033-195237 bp Feature: domain Description: Big_3 Location: 1 95033-1 95237 bp Feature: gene Location: 197958-199133 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 198201-198762 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 98201 -1 98762 bp Feature: gene Location: 199148-199477 bp Feature: gene Location: 199470-199955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Big_3 (pfam07523), RVT-DGRs

Seq: JH590866.1 Lachnospiraceae bacterium 7_1_58FAA genomic scaffold supercont1.1, whole genome shotgun sequence (604426 bp)
Overview 1 RT 1: 564741-569153 bp Neighborhood of RT #1 [564741, 569153] ChiA1_BD ChiA1_BD RVT-DGRs Avd_like Feature: gene Location: 564741-565277 bp Feature: domain Description: ChiA1_BD Location: 564915-565047 bp Feature: domain Description: ChiA1_BD Location: 564915-565047 bp Feature: domain Description: ChiA1_BD Location: 565104-565182 bp Feature: domain Description: ChiA1_BD Location: 565104-565182 bp Feature: gene Location: 565270-566994 bp Feature: gene Location: 567035-568237 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 567278-567983 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5672 78-567983 bp Feature: gene Location: 568571-568924 bp Feature: domain Description: Avd_like Location: 568613-568904 bp Feature: domain Description: Avd_like Location: 568613-568904 bp Feature: gene Location: 568893-569153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChiA1_BD (cd12214), RVT-DGRs, Avd_like (cd16376)

Seq: JH590869.1 Lachnospiraceae bacterium 7_1_58FAA genomic scaffold supercont1.4, whole genome shotgun sequence (466273 bp)
Overview 1 RT 1: 61579-78702 bp 2 RT 2: 319389-324846 bp Neighborhood of RT #1 [61579, 79826] TTRAP LPD11 YtxK COG4646 RVT-GII HNHc COG4646 KOG0390 MobC Relaxase RVT-GII Intron_maturas2 HNHc S_TKc Neighborhood of RT #2 [319389, 324846] RVT-DGRs Feature: gene Location: 61579-61785 bp Feature: domain Description: TTRAP Location: 61591-61780 bp Feature: domain Description: TTRAP Location: 61591-61780 bp Feature: gene Location: 61804-67725 bp Feature: domain Description: LPD11 Location: 64543-64735 bp Feature: domain Description: LPD11 Location: 64543 -6473 5 bp Feature: domain Description: YtxK Location: 65386-66133 bp Feature: domain Description: YtxK Location: 653 86-6613 3 bp Feature: domain Description: COG4646 Location: 66205-67717 bp Feature: domain Description: COG4646 Location: 66205-67717 bp Feature: gene Location: 68458-70338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68776-69502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68776-69502 bp Feature: domain Description: HNHc Note: nucleases Location: 70054-70222 bp Feature: domain Description: HNHc Note: nucleases Location: 70054-70222 bp Feature: gene Location: 70523-72925 bp Feature: domain Description: COG4646 Location: 70526-71576 bp Feature: domain Description: COG4646 Location: 70526-71576 bp Feature: domain Description: KOG0390 Location: 71849-72104 bp Feature: domain Description: KOG03 90 Location: 71849-72104 bp Feature: gene Location: 72925-73257 bp Feature: domain Description: MobC Location: 73117-73225 bp Feature: domain Description: MobC Location: 73 117-73 225 bp Feature: gene Location: 73374-73658 bp Feature: gene Location: 73721-74125 bp Feature: domain Description: Relaxase Location: 73847-74090 bp Feature: domain Description: Relaxase Location: 73 847-74090 bp Feature: gene Location: 74667-76469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74934-75750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7493 4-75750 bp Feature: domain Description: Intron_maturas2 Location: 75885-76125 bp Feature: domain Description: Intron_maturas2 Location: 75885-76125 bp Feature: domain Description: HNHc Note: nucleases Location: 76299-76449 bp Feature: domain Description: HNHc Note: nucleases Location: 76299-76449 bp Feature: gene Location: 76679-77632 bp Feature: gene Location: 77916-79826 bp Feature: domain Description: S_TKc Location: 77958-78702 bp Feature: domain Description: S_TKc Location: 77958-78702 bp Feature: gene Location: 319389-319988 bp Feature: gene Location: 319991-320263 bp Feature: gene Location: 320646-321827 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 320907-321549 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 20907-3 21549 bp Feature: gene Location: 322282-322737 bp Feature: gene Location: 322816-324846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TTRAP (pfam14203), LPD11 (pfam18824), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, HNHc (smart00507), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), MobC (pfam05713), Relaxase (pfam03432), Intron_maturas2 (pfam01348)
S_TKc (smart00220), RVT-DGRs

Seq: JH590881.1 Lachnospiraceae bacterium 7_1_58FAA genomic scaffold supercont1.16, whole genome shotgun sequence (102489 bp)
Overview 1 RT 1: 98973-101568 bp Neighborhood of RT #1 [98973, 101903] TraC-F-type RVT-GII Intron_maturas2 Feature: gene Location: 98973-99337 bp Feature: gene Location: 99623-99982 bp Feature: domain Description: TraC-F-type Location: 99647-99821 bp Feature: domain Description: TraC-F-type Location: 9964 7-99821 bp Feature: gene Location: 100092-101903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100356-101190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100356-101190 bp Feature: domain Description: Intron_maturas2 Location: 101259-101568 bp Feature: domain Description: Intron_maturas2 Location: 101259-101568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), TraC-F-type (TIGR02746)

Seq: JH590882.1 Lachnospiraceae bacterium 7_1_58FAA genomic scaffold supercont1.17, whole genome shotgun sequence (95295 bp)
Overview 1 RT 1: 6666-12696 bp Neighborhood of RT #1 [6666, 12920] ChiA1_BD ChiA1_BD RVT-DGRs Dystroglycan_repeat BACON Tail_P2_I Feature: gene Location: 6666-6848 bp Feature: gene Location: 6845-7489 bp Feature: domain Description: ChiA1_BD Location: 7193-7319 bp Feature: domain Description: ChiA1_BD Location: 7193-7319 bp Feature: domain Description: ChiA1_BD Location: 7379-7463 bp Feature: domain Description: ChiA1_BD Location: 7379-7463 bp Feature: gene Location: 7450-8553 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7666-8332 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7666-8332 bp Feature: gene Location: 9135-12218 bp Feature: domain Description: Dystroglycan_repeat Location: 10281-10398 bp Feature: domain Description: Dystroglycan_repeat Location: 10281-10398 bp Feature: domain Description: BACON Location: 10932-11142 bp Feature: domain Description: BACON Location: 10932-11142 bp Feature: gene Location: 12222-12920 bp Feature: domain Description: Tail_P2_I Location: 12297-12696 bp Feature: domain Description: Tail_P2_I Location: 12297-12696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tail_P2_I (pfam09684), ChiA1_BD (cd12214), RVT-DGRs, Dystroglycan_repeat (cd11303), BACON (pfam13004)

Seq: JH590868.1 Lachnospiraceae bacterium 7_1_58FAA genomic scaffold supercont1.3, whole genome shotgun sequence (469609 bp)
Overview 1 RT 1: 388568-391826 bp 2 RT 2: 412349-415799 bp Neighborhood of RT #1 [388568, 391826] COG4877 RVT-DGRs ChiA1_BD ChtBD3 Neighborhood of RT #2 [412349, 415799] RVT-DGRs Avd_like Feature: gene Location: 388568-388756 bp Feature: domain Description: COG4877 Location: 388574-388703 bp Feature: domain Description: COG4877 Location: 388574-388703 bp Feature: gene Location: 388760-389224 bp Feature: gene Location: 389685-390857 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 389943-390591 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 389943-390591 bp Feature: gene Location: 390818-391435 bp Feature: domain Description: ChiA1_BD Location: 391133-391262 bp Feature: domain Description: ChiA1_BD Location: 391133-39126 2 bp Feature: domain Description: ChtBD3 Location: 391322-391403 bp Feature: domain Description: ChtBD3 Location: 391322-391403 bp Feature: gene Location: 391425-391826 bp Feature: gene Location: 412349-412837 bp Feature: gene Location: 412906-413568 bp Feature: gene Location: 413516-414763 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 413711-414395 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 413711-414395 bp Feature: gene Location: 415151-415573 bp Feature: domain Description: Avd_like Location: 415193-415526 bp Feature: domain Description: Avd_like Location: 415193-415526 bp Feature: gene Location: 415566-415799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4877 (Uncharacterized protein ), RVT-DGRs, ChiA1_BD (cd12214), ChtBD3 (smart00495), Avd_like (cd16376)

Seq: JH590875.1 Lachnospiraceae bacterium 7_1_58FAA genomic scaffold supercont1.10, whole genome shotgun sequence (149892 bp)
Overview 1 RT 1: 10310-14534 bp Neighborhood of RT #1 [10310, 14554] RVT-DGRs Avd_like Feature: gene Location: 10310-11068 bp Feature: gene Location: 11081-12787 bp Feature: gene Location: 12750-13832 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12948-13638 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12948-13638 bp Feature: gene Location: 13804-14118 bp Feature: gene Location: 14150-14554 bp Feature: domain Description: Avd_like Location: 14183-14534 bp Feature: domain Description: Avd_like Location: 14183-14534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: JH590923.1 Lachnospiraceae bacterium 7_1_58FAA genomic scaffold supercont1.58, whole genome shotgun sequence (2518 bp)
Overview 1 RT 1: 601-2401 bp Neighborhood of RT #1 [601, 2430] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 601-2430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865-1693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 65-1693 bp Feature: domain Description: Intron_maturas2 Location: 1771-2110 bp Feature: domain Description: Intron_maturas2 Location: 1771-2110 bp Feature: domain Description: HNHc Note: nucleases Location: 2236-2401 bp Feature: domain Description: HNHc Note: nucleases Location: 2236-2401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JH590872.1 Lachnospiraceae bacterium 7_1_58FAA genomic scaffold supercont1.7, whole genome shotgun sequence (281819 bp)
Overview 1 RT 1: 203227-207191 bp Neighborhood of RT #1 [203227, 207191] RVT-DGRs Feature: gene Location: 203227-203685 bp Feature: gene Location: 203682-203975 bp Feature: gene Location: 203914-205128 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 204190-204793 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20419 0-20479 3 bp Feature: gene Location: 205563-205991 bp Feature: gene Location: 206043-207191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: JH590885.1 Lachnospiraceae bacterium 7_1_58FAA genomic scaffold supercont1.20, whole genome shotgun sequence (89484 bp)
Overview 1 RT 1: 51386-57578 bp Neighborhood of RT #1 [51386, 57592] TrmO TrmO_C RVT-Retrons PRK08279 FACL_like_6 ALDH_Acyl-CoA-Red_LuxC Feature: gene Location: 51386-52093 bp Feature: domain Description: TrmO Location: 51443-51812 bp Feature: domain Description: TrmO Location: 51443-51812 bp Feature: domain Description: TrmO_C Location: 51866-52028 bp Feature: domain Description: TrmO_C Location: 51866-52028 bp Feature: gene Location: 52131-53726 bp Feature: gene Location: 53743-54666 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53857-54403 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53857-54403 bp Feature: gene Location: 54959-56392 bp Feature: domain Description: PRK08279 Location: 54986-55247 bp Feature: domain Description: PRK08279 Location: 54986-55247 bp Feature: domain Description: FACL_like_6 Location: 55331-56381 bp Feature: domain Description: FACL_like_6 Location: 55331-56381 bp Feature: gene Location: 56402-57592 bp Feature: domain Description: ALDH_Acyl-CoA-Red_LuxC Location: 56624-57578 bp Feature: domain Description: ALDH_Acyl-CoA-Red_LuxC Location: 56624-57578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrmO, TrmO_C (pfam18389), RVT-Retrons, PRK08279 (long-chain-acyl-CoA synthetase; Validated), FACL_like_6 (cd05922), ALDH_Acyl-CoA-Red_LuxC (cd07080)