myRT

myRT report for GCA_000242175.1_Erys_bact_6_1_45_V1

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Seq: JH590968.1 Erysipelotrichaceae bacterium 6_1_45 genomic scaffold supercont1.1, whole genome shotgun sequence (1457366 bp)
Overview 1 RT 1: 1020888-1033177 bp 2 RT 2: 1406123-1419115 bp Neighborhood of RT #1 [1020888, 1033299] TTRAP YtxK COG4646 RVT-GII Intron_maturas2 COG4646 KOG1000 DUF3848 DUF3849 Neighborhood of RT #2 [1406123, 1419115] Methyltransf_11 COG4646 HELICc RVT-GII Intron_maturas2 LPD11 YtxK COG4646 Feature: gene Location: 1020888-1021103 bp Feature: domain Description: TTRAP Location: 1020900-1021089 bp Feature: domain Description: TTRAP Location: 1 020900-1 021 089 bp Feature: gene Location: 1021182-1028120 bp Feature: domain Description: YtxK Location: 1025190-1025880 bp Feature: domain Description: YtxK Location: 1 0251 90-1 025880 bp Feature: domain Description: COG4646 Location: 1025949-1028106 bp Feature: domain Description: COG4646 Location: 1 025949-1 0281 06 bp Feature: gene Location: 1028698-1030512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028962-1029781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 028962-1 029781 bp Feature: domain Description: Intron_maturas2 Location: 1029850-1030192 bp Feature: domain Description: Intron_maturas2 Location: 1 029850-1 0301 92 bp Feature: gene Location: 1030509-1032479 bp Feature: domain Description: COG4646 Location: 1030620-1031037 bp Feature: domain Description: COG4646 Location: 1 030620-1 031 037 bp Feature: domain Description: KOG1000 Location: 1031475-1031679 bp Feature: domain Description: KOG1 000 Location: 1 031 475-1 031 679 bp Feature: gene Location: 1032481-1033299 bp Feature: domain Description: DUF3848 Location: 1032499-1032778 bp Feature: domain Description: DUF3848 Location: 1 032499-1 032778 bp Feature: domain Description: DUF3849 Location: 1032814-1033177 bp Feature: domain Description: DUF3849 Location: 1 03281 4-1 0331 77 bp Feature: gene Location: 1406123-1406746 bp Feature: domain Description: Methyltransf_11 Location: 1406276-1406570 bp Feature: domain Description: Methyltransf_1 1 Location: 1 406276-1 406570 bp Feature: gene Location: 1406868-1408706 bp Feature: domain Description: COG4646 Location: 1406979-1407399 bp Feature: domain Description: COG4646 Location: 1 406979-1 407399 bp Feature: domain Description: HELICc Location: 1407444-1407813 bp Feature: domain Description: HELICc Location: 1 407444-1 40781 3 bp Feature: gene Location: 1408703-1410517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1408967-1409786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 408967-1 409786 bp Feature: domain Description: Intron_maturas2 Location: 1409855-1410197 bp Feature: domain Description: Intron_maturas2 Location: 1 409855-1 41 01 97 bp Feature: gene Location: 1411095-1418786 bp Feature: domain Description: LPD11 Location: 1415133-1415328 bp Feature: domain Description: LPD1 1 Location: 1 41 51 33-1 41 5328 bp Feature: domain Description: YtxK Location: 1416102-1416522 bp Feature: domain Description: YtxK Location: 1 41 61 02-1 41 6522 bp Feature: domain Description: COG4646 Location: 1416582-1418772 bp Feature: domain Description: COG4646 Location: 1 41 6582-1 41 8772 bp Feature: gene Location: 1418807-1419115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TTRAP (pfam14203), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), DUF3848 (pfam12959), DUF3849 (pfam12960), Methyltransf_11 (pfam08241), HELICc (smart00490)
LPD11 (pfam18824)

Seq: JH590972.1 Erysipelotrichaceae bacterium 6_1_45 genomic scaffold supercont1.5, whole genome shotgun sequence (331936 bp)
Overview 1 RT 1: 307705-316398 bp Neighborhood of RT #1 [307705, 316439] KOG3882 RVT-GII GIIM Y2_Tnp RPOL9 RPOL9 PRK04841 RVT-GII Intron_maturas2 TMR_SDR_a Feature: gene Location: 307705-308217 bp Feature: gene Location: 308347-308682 bp Feature: domain Description: KOG3882 Location: 308389-308551 bp Feature: domain Description: KOG3882 Location: 308389-308551 bp Feature: gene Location: 309699-310970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309954-310623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309954-31062 3 bp Feature: domain Description: GIIM Note: maturase Location: 310713-310908 bp Feature: domain Description: GIIM Note: maturase Location: 310713-310908 bp Feature: gene Location: 311596-312030 bp Feature: domain Description: Y2_Tnp Location: 311602-311788 bp Feature: domain Description: Y2 _Tnp Location: 311602 -311788 bp Feature: gene Location: 311972-312181 bp Feature: domain Description: RPOL9 Location: 312017-312062 bp Feature: domain Description: RPOL9 Location: 312 017-312 062 bp Feature: domain Description: RPOL9 Location: 312122-312158 bp Feature: domain Description: RPOL9 Location: 312 12 2 -312 158 bp Feature: gene Location: 312300-312653 bp Feature: domain Description: PRK04841 Location: 312321-312465 bp Feature: domain Description: PRK04841 Location: 312 32 1-312 465 bp Feature: gene Location: 313256-313438 bp Feature: gene Location: 313445-315271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 313712-314549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 313712 -314549 bp Feature: domain Description: Intron_maturas2 Location: 314627-314930 bp Feature: domain Description: Intron_maturas2 Location: 31462 7-314930 bp Feature: gene Location: 315198-315476 bp Feature: gene Location: 315579-316439 bp Feature: domain Description: TMR_SDR_a Location: 315591-316398 bp Feature: domain Description: TMR_SDR_a Location: 315591-316398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG3882 (KOG3882, Tetraspanin family integral membrane protein ), RVT-GII, GIIM (pfam08388), Y2_Tnp (pfam04986), RPOL9 (smart00661), PRK04841 (HTH-type transcriptional regulator MalT), Intron_maturas2 (pfam01348), TMR_SDR_a (cd05269)

Seq: JH590969.1 Erysipelotrichaceae bacterium 6_1_45 genomic scaffold supercont1.2, whole genome shotgun sequence (1207646 bp)
Overview 1 RT 1: 1115295-1121472 bp 2 RT 2: 1165523-1177271 bp Neighborhood of RT #1 [1115295, 1121573] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ClpA Neighborhood of RT #2 [1165523, 1177271] COG4646 HELICc RVT-GII Intron_maturas2 LPD25 YtxK COG4646 Feature: gene Location: 1115295-1116506 bp Feature: domain Description: HTH_XRE Location: 1115343-1115493 bp Feature: domain Description: HTH_XRE Location: 11153 43 -1115493 bp Feature: domain Description: Rol_Rep_N Location: 1115514-1115778 bp Feature: domain Description: Rol_Rep_N Location: 1115514-1115778 bp Feature: domain Description: Rep_trans Location: 1115802-1116417 bp Feature: domain Description: Rep_trans Location: 1115802-1116417 bp Feature: gene Location: 1116511-1116642 bp Feature: domain Description: DUF3789 Location: 1116523-1116616 bp Feature: domain Description: DUF3 789 Location: 1116523 -1116616 bp Feature: gene Location: 1117383-1119293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117716-1118454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1117716-1118454 bp Feature: domain Description: HNHc Note: nucleases Location: 1119009-1119174 bp Feature: domain Description: HNHc Note: nucleases Location: 1119009-1119174 bp Feature: gene Location: 1119707-1120474 bp Feature: gene Location: 1120467-1121573 bp Feature: domain Description: ClpA Location: 1120818-1121472 bp Feature: domain Description: ClpA Location: 1120818-1121472 bp Feature: gene Location: 1165523-1165852 bp Feature: gene Location: 1165933-1167828 bp Feature: domain Description: COG4646 Location: 1166038-1166464 bp Feature: domain Description: COG4646 Location: 116603 8-1166464 bp Feature: domain Description: HELICc Location: 1166509-1166929 bp Feature: domain Description: HELICc Location: 1166509-1166929 bp Feature: gene Location: 1167825-1169639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1168089-1168908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1168089-1168908 bp Feature: domain Description: Intron_maturas2 Location: 1168977-1169319 bp Feature: domain Description: Intron_maturas2 Location: 1168977-11693 19 bp Feature: gene Location: 1170217-1176798 bp Feature: domain Description: LPD25 Location: 1172473-1172785 bp Feature: domain Description: LPD25 Location: 1172473 -1172785 bp Feature: domain Description: YtxK Location: 1173955-1174597 bp Feature: domain Description: YtxK Location: 1173 955-1174597 bp Feature: domain Description: COG4646 Location: 1174645-1176784 bp Feature: domain Description: COG4646 Location: 1174645-1176784 bp Feature: gene Location: 1176813-1177271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507), ClpA (TIGR02639), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), Intron_maturas2 (pfam01348)
LPD25 (pfam18840), YtxK (COG0827)