myRT

myRT report for GCA_000242955.1_Eubact_sp_3_1_31_V1

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Seq: JH594448.1 Eubacterium sp. 3_1_31 genomic scaffold supercont1.1, whole genome shotgun sequence (2298056 bp)
Overview 1 RT 1: 65745-72354 bp 2 RT 2: 253691-260982 bp 3 RT 3: 877948-884547 bp 4 RT 4: 898921-911231 bp 5 RT 5: 1966128-1973235 bp Neighborhood of RT #1 [65745, 72368] M28 cls RVT-GII GIIM GIIM Pat_hypo_Ecoli_yjju_like NDPk_I Neighborhood of RT #2 [253691, 260987] Flg_new Flg_new MucBP COG3464 RVT-GII DDE_Tnp_ISL3 CspC Neighborhood of RT #3 [877948, 884547] VirB4_CagE RVT-GII TraC-F-type Neighborhood of RT #4 [898921, 911611] YtxK COG4646 RVT-GII KOG1000 YodL LPD16 DUF4316 LPD25 Neighborhood of RT #5 [1966128, 1973235] DUF4315 Spr RVT-GII Intron_maturas2 TraC-F-type Feature: gene Location: 65745-66704 bp Feature: domain Description: M28 Location: 66216-66597 bp Feature: domain Description: M28 Location: 6621 6-66597 bp Feature: gene Location: 66724-68262 bp Feature: domain Description: cls Location: 66847-68257 bp Feature: domain Description: cls Location: 66847-68257 bp Feature: gene Location: 68938-70383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69166-69787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691 66-69787 bp Feature: domain Description: GIIM Note: maturase Location: 69865-69988 bp Feature: domain Description: GIIM Note: maturase Location: 69865-69988 bp Feature: domain Description: GIIM Note: maturase Location: 70057-70126 bp Feature: domain Description: GIIM Note: maturase Location: 70057-701 26 bp Feature: gene Location: 70600-71457 bp Feature: domain Description: Pat_hypo_Ecoli_yjju_like Location: 70621-71413 bp Feature: domain Description: Pat_hypo_Ecoli_yjju_like Location: 70621 -71 41 3 bp Feature: gene Location: 71889-72368 bp Feature: domain Description: NDPk_I Location: 71901-72354 bp Feature: domain Description: NDPk_I Location: 71 901 -72354 bp Feature: gene Location: 253691-255955 bp Feature: domain Description: Flg_new Location: 253892-254126 bp Feature: domain Description: Flg_new Location: 253892-2541 26 bp Feature: domain Description: Flg_new Location: 254279-254417 bp Feature: domain Description: Flg_new Location: 254279-25441 7 bp Feature: domain Description: MucBP Location: 254750-254936 bp Feature: domain Description: MucBP Location: 254750-254936 bp Feature: gene Location: 256236-256892 bp Feature: domain Description: COG3464 Location: 256248-256863 bp Feature: domain Description: COG3464 Location: 256248-256863 bp Feature: gene Location: 258106-259782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258187-258913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2581 87-25891 3 bp Feature: gene Location: 259914-260603 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 259917-260508 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 25991 7-260508 bp Feature: gene Location: 260787-260987 bp Feature: domain Description: CspC Location: 260790-260982 bp Feature: domain Description: CspC Location: 260790-260982 bp Feature: gene Location: 877948-878817 bp Feature: gene Location: 879187-881298 bp Feature: domain Description: VirB4_CagE Location: 880021-881194 bp Feature: domain Description: VirB4_CagE Location: 880021 -881 1 94 bp Feature: gene Location: 881972-883945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 882332-883070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 882332-883070 bp Feature: gene Location: 883989-884420 bp Feature: domain Description: TraC-F-type Location: 884058-884313 bp Feature: domain Description: TraC-F-type Location: 884058-88431 3 bp Feature: gene Location: 884437-884547 bp Feature: gene Location: 898921-905571 bp Feature: domain Description: YtxK Location: 901726-902587 bp Feature: domain Description: YtxK Location: 901 726-902587 bp Feature: domain Description: COG4646 Location: 902647-905212 bp Feature: domain Description: COG4646 Location: 902647-90521 2 bp Feature: gene Location: 905775-905873 bp Feature: gene Location: 905926-907602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 906007-906733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 906007-906733 bp Feature: gene Location: 907740-908792 bp Feature: domain Description: KOG1000 Location: 907752-907962 bp Feature: domain Description: KOG1 000 Location: 907752-907962 bp Feature: gene Location: 908873-911611 bp Feature: domain Description: YodL Location: 909653-909947 bp Feature: domain Description: YodL Location: 909653-909947 bp Feature: domain Description: LPD16 Location: 909977-910196 bp Feature: domain Description: LPD1 6 Location: 909977-91 01 96 bp Feature: domain Description: DUF4316 Location: 910247-910331 bp Feature: domain Description: DUF431 6 Location: 91 0247-91 0331 bp Feature: domain Description: LPD25 Location: 910940-911231 bp Feature: domain Description: LPD25 Location: 91 0940-91 1 231 bp Feature: gene Location: 1966128-1966385 bp Feature: domain Description: DUF4315 Location: 1966143-1966377 bp Feature: domain Description: DUF431 5 Location: 1 9661 43-1 966377 bp Feature: gene Location: 1966409-1968364 bp Feature: domain Description: Spr Location: 1967990-1968347 bp Feature: domain Description: Spr Location: 1 967990-1 968347 bp Feature: gene Location: 1968768-1970558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969035-1969848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 969035-1 969848 bp Feature: domain Description: Intron_maturas2 Location: 1969932-1970229 bp Feature: domain Description: Intron_maturas2 Location: 1 969932-1 970229 bp Feature: gene Location: 1971052-1972425 bp Feature: domain Description: TraC-F-type Location: 1971064-1972387 bp Feature: domain Description: TraC-F-type Location: 1 971 064-1 972387 bp Feature: gene Location: 1972453-1973235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M28 (cd02690), cls, RVT-GII, GIIM (pfam08388), Pat_hypo_Ecoli_yjju_like (cd07208), NDPk_I (cd04413), Flg_new (pfam09479), MucBP (pfam06458), COG3464 (Transposase ), DDE_Tnp_ISL3 (pfam01610)
CspC (COG1278), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), YodL (pfam14191), LPD16 (pfam18830), DUF4316 (pfam14195), LPD25 (pfam18840)
DUF4315 (pfam14193), Spr (COG0791), Intron_maturas2 (pfam01348)

Seq: JH594450.1 Eubacterium sp. 3_1_31 genomic scaffold supercont1.3, whole genome shotgun sequence (312834 bp)
Overview 1 RT 1: 236106-243373 bp Neighborhood of RT #1 [236106, 243477] CdAMP_rec NagA RVT-GII RVT-GII GIIM COG5263 Spr MrcB Feature: gene Location: 236106-236429 bp Feature: domain Description: CdAMP_rec Location: 236109-236424 bp Feature: domain Description: CdAMP_rec Location: 2 36109-2 3642 4 bp Feature: gene Location: 236886-237989 bp Feature: domain Description: NagA Location: 236898-237975 bp Feature: domain Description: NagA Location: 2 36898-2 37975 bp Feature: gene Location: 238580-239131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238784-239126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 38784-2 3912 6 bp Feature: gene Location: 239298-239900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239304-239400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 39304-2 39400 bp Feature: domain Description: GIIM Note: maturase Location: 239460-239691 bp Feature: domain Description: GIIM Note: maturase Location: 2 39460-2 39691 bp Feature: gene Location: 240186-241385 bp Feature: domain Description: COG5263 Location: 240300-240729 bp Feature: domain Description: COG52 63 Location: 2 40300-2 4072 9 bp Feature: domain Description: Spr Location: 240858-241326 bp Feature: domain Description: Spr Location: 2 40858-2 4132 6 bp Feature: gene Location: 241612-243477 bp Feature: domain Description: MrcB Location: 241648-243373 bp Feature: domain Description: MrcB Location: 2 41648-2 43373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdAMP_rec (pfam06153), NagA (COG1820), RVT-GII, GIIM (pfam08388), COG5263 (Glucan-binding domain (YG repeat) ), Spr (COG0791), MrcB (COG0744)