myRT

myRT report for GCA_000243335.1_ASM24333v1

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Seq: JH597773.1 Leptonema illini DSM 21528 genomic scaffold Lepilscaffold_1, whole genome shotgun sequence (4325094 bp)
Overview 1 RT 1: 365650-370111 bp 2 RT 2: 568645-573740 bp 3 RT 3: 589602-594049 bp 4 RT 4: 1328122-1336993 bp 5 RT 5: 1914929-1920109 bp 6 RT 6: 2114889-2120054 bp 7 RT 7: 2317395-2321238 bp 8 RT 8: 2406743-2413263 bp 9 RT 9: 3743444-3747157 bp Neighborhood of RT #1 [365650, 370119] DltE rpmF RVT-GII GIIM pheS Neighborhood of RT #2 [568645, 573814] COG3547 RVT-GII GIIM FadM Neighborhood of RT #3 [589602, 594051] AcrR RVT-GII GIIM PRK07053 Neighborhood of RT #4 [1328122, 1337055] TesA OafA RVT-GII GIIM MgtA Neighborhood of RT #5 [1914929, 1920120] RVT-GII GIIM DUF1493 chaperone_ClpB Neighborhood of RT #6 [2114889, 2120314] DUF4105 DUF4105 RVT-GII GIIM YckC Neighborhood of RT #7 [2317395, 2321238] PRK10696 RVT-GII GIIM Neighborhood of RT #8 [2406743, 2413295] RsfS RVT-GII GIIM LytR_cpsA_psr LytR_C flhA Neighborhood of RT #9 [3743444, 3747165] GxxExxY RVT-GII GIIM engB Feature: gene Location: 365650-366423 bp Feature: domain Description: DltE Location: 365662-366409 bp Feature: domain Description: DltE Location: 365662-366409 bp Feature: gene Location: 366509-366703 bp Feature: domain Description: rpmF Location: 366512-366668 bp Feature: domain Description: rpmF Location: 36651 2-366668 bp Feature: gene Location: 366929-368290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367277-367943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367277-367943 bp Feature: domain Description: GIIM Note: maturase Location: 368015-368219 bp Feature: domain Description: GIIM Note: maturase Location: 36801 5-36821 9 bp Feature: gene Location: 368673-368852 bp Feature: gene Location: 368854-370119 bp Feature: domain Description: pheS Location: 369109-370111 bp Feature: domain Description: pheS Location: 3691 09-3701 1 1 bp Feature: gene Location: 568645-569727 bp Feature: domain Description: COG3547 Location: 568669-569620 bp Feature: domain Description: COG3547 Location: 568669-569620 bp Feature: gene Location: 570370-570606 bp Feature: gene Location: 570603-571964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570951-571617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570951 -571 61 7 bp Feature: domain Description: GIIM Note: maturase Location: 571689-571893 bp Feature: domain Description: GIIM Note: maturase Location: 571 689-571 893 bp Feature: gene Location: 572745-573239 bp Feature: gene Location: 573269-573814 bp Feature: domain Description: FadM Location: 573362-573740 bp Feature: domain Description: FadM Location: 573362-573740 bp Feature: gene Location: 589602-590243 bp Feature: domain Description: AcrR Location: 589635-589983 bp Feature: domain Description: AcrR Location: 589635-589983 bp Feature: gene Location: 590804-591022 bp Feature: gene Location: 591316-592659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591649-592303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591 649-592303 bp Feature: domain Description: GIIM Note: maturase Location: 592378-592591 bp Feature: domain Description: GIIM Note: maturase Location: 592378-592591 bp Feature: gene Location: 592812-593000 bp Feature: gene Location: 593362-594051 bp Feature: domain Description: PRK07053 Location: 593374-594049 bp Feature: domain Description: PRK07053 Location: 593374-594049 bp Feature: gene Location: 1328122-1328808 bp Feature: domain Description: TesA Location: 1328194-1328746 bp Feature: domain Description: TesA Location: 1 3281 94-1 328746 bp Feature: gene Location: 1328830-1330878 bp Feature: domain Description: OafA Location: 1328842-1329895 bp Feature: domain Description: OafA Location: 1 328842-1 329895 bp Feature: gene Location: 1332005-1333366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1332353-1333019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 332353-1 33301 9 bp Feature: domain Description: GIIM Note: maturase Location: 1333091-1333295 bp Feature: domain Description: GIIM Note: maturase Location: 1 333091 -1 333295 bp Feature: gene Location: 1333363-1333500 bp Feature: gene Location: 1333618-1337055 bp Feature: domain Description: MgtA Location: 1334131-1336993 bp Feature: domain Description: MgtA Location: 1 3341 31 -1 336993 bp Feature: gene Location: 1914929-1916290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1915277-1915943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 5277-1 91 5943 bp Feature: domain Description: GIIM Note: maturase Location: 1916015-1916219 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 601 5-1 91 621 9 bp Feature: gene Location: 1916956-1917315 bp Feature: domain Description: DUF1493 Location: 1917007-1917277 bp Feature: domain Description: DUF1 493 Location: 1 91 7007-1 91 7277 bp Feature: gene Location: 1917553-1920120 bp Feature: domain Description: chaperone_ClpB Location: 1917574-1920109 bp Feature: domain Description: chaperone_ClpB Location: 1 91 7574-1 9201 09 bp Feature: gene Location: 2114889-2116610 bp Feature: domain Description: DUF4105 Location: 2115102-2115231 bp Feature: domain Description: DUF41 05 Location: 21 1 51 02-21 1 5231 bp Feature: domain Description: DUF4105 Location: 2116029-2116158 bp Feature: domain Description: DUF41 05 Location: 21 1 6029-21 1 61 58 bp Feature: gene Location: 2116661-2117122 bp Feature: gene Location: 2117638-2118981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2117971-2118625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 7971 -21 1 8625 bp Feature: domain Description: GIIM Note: maturase Location: 2118700-2118913 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 8700-21 1 891 3 bp Feature: gene Location: 2119134-2119322 bp Feature: gene Location: 2119526-2120314 bp Feature: domain Description: YckC Location: 2119613-2120054 bp Feature: domain Description: YckC Location: 21 1 961 3-21 20054 bp Feature: gene Location: 2317395-2318195 bp Feature: domain Description: PRK10696 Location: 2317410-2318145 bp Feature: domain Description: PRK1 0696 Location: 231 741 0-231 81 45 bp Feature: gene Location: 2318315-2318434 bp Feature: gene Location: 2318431-2319792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2318779-2319445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 8779-231 9445 bp Feature: domain Description: GIIM Note: maturase Location: 2319517-2319721 bp Feature: domain Description: GIIM Note: maturase Location: 231 951 7-231 9721 bp Feature: gene Location: 2320175-2320645 bp Feature: gene Location: 2320741-2321238 bp Feature: gene Location: 2406743-2407432 bp Feature: domain Description: RsfS Location: 2407076-2407400 bp Feature: domain Description: RsfS Location: 2407076-2407400 bp Feature: gene Location: 2407775-2407912 bp Feature: gene Location: 2407909-2409270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2408257-2408923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2408257-2408923 bp Feature: domain Description: GIIM Note: maturase Location: 2408995-2409199 bp Feature: domain Description: GIIM Note: maturase Location: 2408995-24091 99 bp Feature: gene Location: 2410075-2411175 bp Feature: domain Description: LytR_cpsA_psr Location: 2410339-2410621 bp Feature: domain Description: LytR_cpsA_psr Location: 241 0339-241 0621 bp Feature: domain Description: LytR_C Location: 2410891-2411149 bp Feature: domain Description: LytR_C Location: 241 0891 -241 1 1 49 bp Feature: gene Location: 2411172-2413295 bp Feature: domain Description: flhA Location: 2411208-2413263 bp Feature: domain Description: flhA Location: 241 1 208-241 3263 bp Feature: gene Location: 3743444-3743863 bp Feature: domain Description: GxxExxY Location: 3743501-3743846 bp Feature: domain Description: GxxExxY Location: 3743501 -3743846 bp Feature: gene Location: 3744148-3744411 bp Feature: gene Location: 3744702-3746045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3745035-3745689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3745035-3745689 bp Feature: domain Description: GIIM Note: maturase Location: 3745764-3745977 bp Feature: domain Description: GIIM Note: maturase Location: 3745764-3745977 bp Feature: gene Location: 3746198-3746386 bp Feature: gene Location: 3746545-3747165 bp Feature: domain Description: engB Location: 3746572-3747157 bp Feature: domain Description: engB Location: 3746572-37471 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DltE (COG3967), rpmF (PRK12286), RVT-GII, GIIM (pfam08388), pheS (TIGR00468), COG3547 (Transposase ), FadM (COG0824), AcrR (COG1309), PRK07053 (glutamine amidotransferase; Provisional), TesA (COG2755)
OafA (COG1835), MgtA (COG0474), DUF1493 (pfam07377), chaperone_ClpB (TIGR03346), DUF4105 (pfam13387), YckC (COG1714), PRK10696 (tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional), RsfS (pfam02410), LytR_cpsA_psr (pfam03816), LytR_C (pfam13399)
flhA (PRK12792), GxxExxY (TIGR04256), engB (PRK00454)