myRT

myRT report for GCA_000245415.1_ASM24541v1

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Seq: AGNO01000015.1 Pseudomonas syringae pv. actinidiae CFBP 7286 scf_12383_23_contig_1, whole genome shotgun sequence (48248 bp)
Overview 1 RT 1: 1-5910 bp Neighborhood of RT #1 [1, 5910] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 1-1224 bp Feature: domain Description: COG3666 Location: 43-484 bp Feature: domain Description: COG3666 Location: 43-484 bp Feature: domain Description: DDE_Tnp_1_6 Location: 961-1183 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 961 -1 1 83 bp Feature: gene Location: 1475-1636 bp Feature: gene Location: 1722-3431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1875-2472 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 875-2472 bp Feature: gene Location: 3875-5293 bp Feature: domain Description: ComA-like_MBL-fold Location: 4424-4910 bp Feature: domain Description: ComA-like_MBL-fold Location: 4424-491 0 bp Feature: gene Location: 5647-5910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: AGNO01000024.1 Pseudomonas syringae pv. actinidiae CFBP 7286 scf_12383_47_contig_1, whole genome shotgun sequence (334 bp)
Overview 1 RT 1: 3-210 bp Neighborhood of RT #1 [3, 332] RVT-GII Feature: gene Location: 3-332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 -2 10 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AGNO01000241.1 Pseudomonas syringae pv. actinidiae CFBP 7286 scf_12383_885_contig_1, whole genome shotgun sequence (267 bp)
Overview 1 RT 1: 3-267 bp Neighborhood of RT #1 [3, 266] RVT-GII Feature: gene Location: 3-266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6-267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AGNO01000285.1 Pseudomonas syringae pv. actinidiae CFBP 7286 scf_12383_1171_contig_1, whole genome shotgun sequence (4750 bp)
Overview 1 RT 1: 1570-3842 bp Neighborhood of RT #1 [1570, 4594] UvrD_C RVT-UG9 Feature: gene Location: 1570-2514 bp Feature: gene Location: 2875-3465 bp Feature: domain Description: UvrD_C Location: 3199-3394 bp Feature: domain Description: UvrD_C Location: 3199-3394 bp Feature: gene Location: 3563-4594 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3569-3842 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3569-384 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: JH600676.1 Pseudomonas syringae pv. actinidiae CFBP 7286 genomic scaffold scf_12383_2334, whole genome shotgun sequence (36988 bp)
Overview 1 RT 1: 1139-7102 bp Neighborhood of RT #1 [1139, 7110] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1139-1774 bp Feature: domain Description: DUF2625 Location: 1151-1739 bp Feature: domain Description: DUF2625 Location: 115 1-1739 bp Feature: gene Location: 1781-1972 bp Feature: gene Location: 2212-4047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2473-3286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2473-3286 bp Feature: domain Description: Intron_maturas2 Location: 3382-3697 bp Feature: domain Description: Intron_maturas2 Location: 3382-3697 bp Feature: domain Description: HNHc Note: nucleases Location: 3820-3985 bp Feature: domain Description: HNHc Note: nucleases Location: 3820-3985 bp Feature: gene Location: 4878-5933 bp Feature: domain Description: Top1 Location: 4911-5925 bp Feature: domain Description: Top1 Location: 4911-5 925 bp Feature: gene Location: 6022-7110 bp Feature: domain Description: modC_ABC Location: 6037-7102 bp Feature: domain Description: modC_ABC Location: 6037-7102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)