myRT

myRT report for GCA_000245475.1_ASM24547v1

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Seq: AGUH01000003.1 Pseudomonas syringae pv. actinidiae CH2010-6 scf_12384_4_contig_1, whole genome shotgun sequence (4794 bp)
Overview 1 RT 1: 179-3203 bp Neighborhood of RT #1 [179, 3203] RVT-UG9 UvrD_C Feature: gene Location: 179-1210 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 185-458 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1 85-458 bp Feature: gene Location: 1308-1898 bp Feature: domain Description: UvrD_C Location: 1632-1827 bp Feature: domain Description: UvrD_C Location: 1 632-1 827 bp Feature: gene Location: 2259-3203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: AGUH01000007.1 Pseudomonas syringae pv. actinidiae CH2010-6 scf_12384_8_contig_1, whole genome shotgun sequence (1339 bp)
Overview 1 RT 1: 88-1198 bp Neighborhood of RT #1 [88, 1338] RVT-GII GIIM Feature: gene Location: 88-1338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 8-943 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AGUH01000024.1 Pseudomonas syringae pv. actinidiae CH2010-6 scf_12384_34_contig_1, whole genome shotgun sequence (490 bp)
Overview 1 RT 1: 2-488 bp Neighborhood of RT #1 [2, 487] RVT-GII Feature: gene Location: 2-487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77-488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AGUH01000025.1 Pseudomonas syringae pv. actinidiae CH2010-6 scf_12384_35_contig_1, whole genome shotgun sequence (1594 bp)
Overview 1 RT 1: 323-1484 bp Neighborhood of RT #1 [323, 1591] RVT-GII GIIM Feature: gene Location: 323-1591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527-1184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527-1184 bp Feature: domain Description: GIIM Note: maturase Location: 1262-1484 bp Feature: domain Description: GIIM Note: maturase Location: 1262-14 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AGUH01000174.1 Pseudomonas syringae pv. actinidiae CH2010-6 scf_12384_190_contig_1, whole genome shotgun sequence (286 bp)
Overview 1 RT 1: 3-207 bp Neighborhood of RT #1 [3, 284] RVT-GII Feature: gene Location: 3-284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JH600971.1 Pseudomonas syringae pv. actinidiae CH2010-6 genomic scaffold scf_12384_283, whole genome shotgun sequence (48453 bp)
Overview 1 RT 1: 23-5932 bp Neighborhood of RT #1 [23, 5932] COG3666 DDE_Tnp_1_6 RVT-Retrons ComA-like_MBL-fold Feature: gene Location: 23-1246 bp Feature: domain Description: COG3666 Location: 65-506 bp Feature: domain Description: COG36 6 6 Location: 6 5-506 bp Feature: domain Description: DDE_Tnp_1_6 Location: 983-1205 bp Feature: domain Description: DDE_Tnp_1_6 Location: 983-1205 bp Feature: gene Location: 1497-1658 bp Feature: gene Location: 1744-3453 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1897-2494 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1897-2494 bp Feature: gene Location: 3897-5315 bp Feature: domain Description: ComA-like_MBL-fold Location: 4446-4932 bp Feature: domain Description: ComA-like_MBL-fold Location: 4446 -4932 bp Feature: gene Location: 5669-5932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons, ComA-like_MBL-fold (cd07731)

Seq: JH601007.1 Pseudomonas syringae pv. actinidiae CH2010-6 genomic scaffold scf_12384_518, whole genome shotgun sequence (20307 bp)
Overview 1 RT 1: 1162-7125 bp Neighborhood of RT #1 [1162, 7133] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 1162-1797 bp Feature: domain Description: DUF2625 Location: 1174-1762 bp Feature: domain Description: DUF2625 Location: 117 4-17 62 bp Feature: gene Location: 1804-1995 bp Feature: gene Location: 2235-4070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2496-3309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2496-3309 bp Feature: domain Description: Intron_maturas2 Location: 3405-3720 bp Feature: domain Description: Intron_maturas2 Location: 3405-37 20 bp Feature: domain Description: HNHc Note: nucleases Location: 3843-4008 bp Feature: domain Description: HNHc Note: nucleases Location: 3843-4008 bp Feature: gene Location: 4901-5956 bp Feature: domain Description: Top1 Location: 4934-5948 bp Feature: domain Description: Top1 Location: 4934-5948 bp Feature: gene Location: 6045-7133 bp Feature: domain Description: modC_ABC Location: 6060-7125 bp Feature: domain Description: modC_ABC Location: 6060-7 125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)