myRT

myRT report for GCA_000247475.2_ASM24747v2

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Seq: AHZC01000134.1 Rhizobium sp. PDO1-076 strain PDO-076 ctg220, whole genome shotgun sequence (5147 bp)
Overview 1 RT 1: 1-4716 bp Neighborhood of RT #1 [1, 4982] RVT-Retrons Feature: gene Location: 1-2129 bp Feature: gene Location: 2160-3647 bp Feature: gene Location: 3831-4982 bp Ori: EHS52162.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4074-4716 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4074-471 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: AHZC01000227.1 Rhizobium sp. PDO1-076 strain PDO-076 ctg304, whole genome shotgun sequence (2163 bp)
Overview 1 RT 1: 1-2010 bp Neighborhood of RT #1 [1, 2072] RVT-GII GIIM COG3415 Feature: gene Location: 1-1071 bp Ori: EHS51357.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217-871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 17-871 bp Feature: domain Description: GIIM Note: maturase Location: 952-1069 bp Feature: domain Description: GIIM Note: maturase Location: 952 -1069 bp Feature: gene Location: 1662-2072 bp Ori: EHS51358.1 Feature: domain Description: COG3415 Location: 1665-2010 bp Feature: domain Description: COG3415 Location: 1665-2 010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3415 (Transposase )

Seq: AHZC01000114.1 Rhizobium sp. PDO1-076 strain PDO-076 ctg202, whole genome shotgun sequence (5940 bp)
Overview 1 RT 1: 3295-5616 bp Neighborhood of RT #1 [3295, 5618] RVT-GII PHA02517 Feature: gene Location: 3295-3852 bp Feature: gene Location: 3873-4412 bp Feature: gene Location: 4598-5170 bp Ori: EHS52360.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4601-4910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4601-4910 bp Feature: gene Location: 5271-5618 bp Ori: EHS52361.1 Feature: domain Description: PHA02517 Location: 5274-5616 bp Feature: domain Description: PHA02517 Location: 5274-5616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: AHZC01000054.1 Rhizobium sp. PDO1-076 strain PDO-076 ctg149, whole genome shotgun sequence (9906 bp)
Overview 1 RT 1: 4951-9906 bp Neighborhood of RT #1 [4951, 9906] PinE RVT-GII Feature: gene Location: 4951-5886 bp Ori: EHS53249.1 Feature: domain Description: PinE Location: 4996-5485 bp Feature: domain Description: PinE Location: 4 996-54 85 bp Feature: gene Location: 6574-6924 bp Feature: gene Location: 8132-9394 bp Ori: EHS53251.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8336-9020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8336-9020 bp Feature: gene Location: 9403-9906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII