myRT

myRT report for GCA_000248935.2_ASM24893v2

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Seq: AHVR01000002.1 Staphylococcus aureus subsp. aureus CIGC340D PSABG_3_CIGC340D.contig.2_1, whole genome shotgun sequence (1055523 bp)
Overview 1 RT 1: 46416-52608 bp Neighborhood of RT #1 [46416, 52608] AlsD PRK08617 RVT-Retrons Feature: gene Location: 46416-47120 bp Ori: EHT82711.1 Feature: domain Description: AlsD Location: 46419-47118 bp Feature: domain Description: AlsD Location: 4641 9-471 1 8 bp Feature: gene Location: 47157-48821 bp Ori: EHT82712.1 Gene: alsS Feature: domain Description: PRK08617 Location: 47166-48813 bp Feature: domain Description: PRK0861 7 Location: 471 66-4881 3 bp Feature: gene Location: 50071-51087 bp Ori: EHT82713.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50221-50758 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50221 -50758 bp Feature: gene Location: 51332-51961 bp Feature: gene Location: 51961-52608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlsD (COG3527), PRK08617 (acetolactate synthase AlsS), RVT-Retrons

Seq: AHVR01000001.1 Staphylococcus aureus subsp. aureus CIGC340D PSABG_3_CIGC340D.contig.0_1, whole genome shotgun sequence (28798 bp)
Overview 1 RT 1: 44-2131 bp 2 RT 2: 23205-28701 bp Neighborhood of RT #1 [44, 2131] RVT-AbiK Neighborhood of RT #2 [23205, 28701] MecR1 Transpeptidase PenP RVT-AbiK Feature: gene Location: 44-433 bp Ori: EHT84420.1 Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 53-350 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 53-350 bp Feature: gene Location: 732-983 bp Feature: gene Location: 1523-2131 bp Feature: gene Location: 23205-24962 bp Ori: EHT84445.1 Gene: blaR1 Feature: domain Description: MecR1 Location: 23208-24237 bp Feature: domain Description: MecR1 Location: 2 32 08-2 42 37 bp Feature: domain Description: Transpeptidase Location: 24291-24936 bp Feature: domain Description: Transpeptidase Location: 2 42 91-2 4936 bp Feature: gene Location: 25069-25914 bp Ori: EHT84446.1 Gene: blaZ Feature: domain Description: PenP Location: 25081-25906 bp Feature: domain Description: PenP Location: 2 5081-2 5906 bp Feature: gene Location: 26268-27359 bp Ori: EHT84447.1 Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 26271-26451 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 2 62 71-2 6451 bp Feature: gene Location: 27828-28037 bp Feature: gene Location: 28576-28701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiK, MecR1 (COG4219), Transpeptidase (pfam00905), PenP (COG2367)