myRT

myRT report for GCA_000249235.2_ASM24923v2

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Seq: AIFD01000077.1 Escherichia coli DEC2E gecDEC2E.contig.77_1, whole genome shotgun sequence (24275 bp)
Overview 1 RT 1: 361-3683 bp Neighborhood of RT #1 [361, 3799] RVT-GII RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 361-474 bp Feature: gene Location: 671-1510 bp Ori: EHU46547.1 Gene: sfiA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929-1385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 929-1 385 bp Feature: gene Location: 1575-2180 bp Ori: EHU46548.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1590-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 590-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1956 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 956 bp Feature: gene Location: 2333-2503 bp Ori: EHU46549.1 Feature: domain Description: PHA02517 Location: 2336-2456 bp Feature: domain Description: PHA0251 7 Location: 2336-2456 bp Feature: gene Location: 2723-3799 bp Ori: EHU46550.1 Feature: domain Description: COG3547 Location: 2762-3683 bp Feature: domain Description: COG3547 Location: 2762-3683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase )

Seq: AIFD01000019.1 Escherichia coli DEC2E gecDEC2E.contig.18_1, whole genome shotgun sequence (100931 bp)
Overview 1 RT 1: 84412-91136 bp Neighborhood of RT #1 [84412, 91321] AAA_23 SMC_prok_A RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 84412-84729 bp Feature: gene Location: 85207-87033 bp Ori: EHU59842.1 Feature: domain Description: AAA_23 Location: 85261-85996 bp Feature: domain Description: AAA_2 3 Location: 852 61-85996 bp Feature: domain Description: SMC_prok_A Location: 86239-86557 bp Feature: domain Description: SMC_prok_A Location: 862 39-86557 bp Feature: gene Location: 88084-89019 bp Ori: EHU59843.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88186-88786 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88186-88786 bp Feature: gene Location: 89016-90668 bp Ori: EHU59844.1 Feature: domain Description: COG3950 Location: 89214-90630 bp Feature: domain Description: COG3950 Location: 892 14-90630 bp Feature: gene Location: 90671-91321 bp Ori: EHU59845.1 Feature: domain Description: TIGR02646 Location: 90737-91136 bp Feature: domain Description: TIGR02 646 Location: 90737-91136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_23 (pfam13476), SMC_prok_A (TIGR02169), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: AIFD01000029.1 Escherichia coli DEC2E gecDEC2E.contig.28_1, whole genome shotgun sequence (45705 bp)
Overview 1 RT 1: 27247-30657 bp Neighborhood of RT #1 [27247, 30677] PHA02517 RVT-GII GIIM PHA02517 GrsT Feature: gene Location: 27247-27672 bp Ori: EHU57158.1 Feature: domain Description: PHA02517 Location: 27271-27607 bp Feature: domain Description: PHA02517 Location: 27271-27607 bp Feature: gene Location: 27969-28082 bp Feature: gene Location: 28279-29787 bp Ori: EHU57160.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28537-29269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2853 7-29269 bp Feature: domain Description: GIIM Note: maturase Location: 29344-29542 bp Feature: domain Description: GIIM Note: maturase Location: 293 44-29542 bp Feature: gene Location: 29979-30350 bp Ori: EHU57161.1 Gene: tnpC Feature: domain Description: PHA02517 Location: 29982-30348 bp Feature: domain Description: PHA02517 Location: 29982-3 03 48 bp Feature: gene Location: 30396-30677 bp Ori: EHU57162.1 Feature: domain Description: GrsT Location: 30399-30657 bp Feature: domain Description: GrsT Location: 3 03 99-3 0657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), GrsT (COG3208)

Seq: AIFD01000071.1 Escherichia coli DEC2E gecDEC2E.contig.71_1, whole genome shotgun sequence (13159 bp)
Overview 1 RT 1: 10554-12831 bp Neighborhood of RT #1 [10554, 13076] PHA02517 RVT-GII GIIM Feature: gene Location: 10554-10961 bp Ori: EHU47026.1 Feature: domain Description: PHA02517 Location: 10560-10896 bp Feature: domain Description: PHA02517 Location: 10560-10896 bp Feature: gene Location: 11258-11371 bp Feature: gene Location: 11568-13076 bp Ori: EHU47028.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11826-12558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11826-12558 bp Feature: domain Description: GIIM Note: maturase Location: 12633-12831 bp Feature: domain Description: GIIM Note: maturase Location: 12633-12831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AIFD01000047.1 Escherichia coli DEC2E gecDEC2E.contig.46_1, whole genome shotgun sequence (360216 bp)
Overview 1 RT 1: 282370-286245 bp Neighborhood of RT #1 [282370, 286250] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 282370-282825 bp Ori: EHU51172.1 Feature: domain Description: dut Location: 282373-282820 bp Feature: domain Description: dut Location: 282373-282820 bp Feature: gene Location: 282932-283528 bp Ori: EHU51173.1 Gene: ttk Feature: domain Description: slmA Location: 282938-283514 bp Feature: domain Description: slmA Location: 282938-2835 14 bp Feature: gene Location: 283572-284531 bp Ori: EHU51174.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 283707-284256 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 283707-28425 6 bp Feature: gene Location: 284828-285469 bp Ori: EHU51175.1 Gene: pyrE Feature: domain Description: pyrE Location: 284831-285464 bp Feature: domain Description: pyrE Location: 284831-285 464 bp Feature: gene Location: 285534-286250 bp Ori: EHU51176.1 Gene: rph Feature: domain Description: rph Location: 285537-286245 bp Feature: domain Description: rph Location: 285 5 37-286245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)