myRT

myRT report for GCA_000249635.2_ASM24963v2

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Seq: AIFX01000053.1 Escherichia coli DEC6C gecDEC6C.contig.52_1, whole genome shotgun sequence (21607 bp)
Overview 1 RT 1: 17891-21571 bp Neighborhood of RT #1 [17891, 21606] Tra8 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 17891-18445 bp Ori: EHV61891.1 Feature: domain Description: Tra8 Location: 17897-18431 bp Feature: domain Description: Tra8 Location: 1 7897-1 8431 bp Feature: gene Location: 18608-19087 bp Ori: EHV61892.1 Feature: domain Description: PHA02517 Location: 18668-19022 bp Feature: domain Description: PHA0251 7 Location: 1 8668-1 9022 bp Feature: gene Location: 19694-21202 bp Ori: EHV61893.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19952-20684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9952-20684 bp Feature: domain Description: GIIM Note: maturase Location: 20759-20957 bp Feature: domain Description: GIIM Note: maturase Location: 20759-20957 bp Feature: gene Location: 21319-21606 bp Ori: EHV61894.1 Feature: domain Description: PHA02517 Location: 21322-21571 bp Feature: domain Description: PHA0251 7 Location: 21 322-21 571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AIFX01000024.1 Escherichia coli DEC6C gecDEC6C.contig.23_1, whole genome shotgun sequence (3838 bp)
Overview 1 RT 1: 1-2776 bp Neighborhood of RT #1 [1, 2928] PHA02517 RVT-GII RVT-GII PHA02517 Feature: gene Location: 1-135 bp Ori: EHV67657.1 Feature: domain Description: PHA02517 Location: 7-70 bp Feature: domain Description: PHA02 517 Location: 7-70 bp Feature: gene Location: 742-1212 bp Ori: EHV67653.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1000-1183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1000-1183 bp Feature: gene Location: 1413-1922 bp Ori: EHV67655.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1419-1728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1419-172 8 bp Feature: gene Location: 1919-2251 bp Feature: gene Location: 2368-2928 bp Ori: EHV67652.1 Feature: domain Description: PHA02517 Location: 2371-2776 bp Feature: domain Description: PHA02 517 Location: 2 371-2 776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: AIFX01000011.1 Escherichia coli DEC6C gecDEC6C.contig.10_1, whole genome shotgun sequence (9062 bp)
Overview 1 RT 1: 738-3146 bp Neighborhood of RT #1 [738, 3157] RVT-GII GIIM PHA02517 DDE_Tnp_IS66 DDE_Tnp_IS66_C DDE_3 Feature: gene Location: 738-1571 bp Ori: EHV69070.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 744-1053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 744-1053 bp Feature: domain Description: GIIM Note: maturase Location: 1128-1347 bp Feature: domain Description: GIIM Note: maturase Location: 1128-13 47 bp Feature: gene Location: 1689-2771 bp Ori: EHV69067.1 Feature: domain Description: PHA02517 Location: 1692-2097 bp Feature: domain Description: PHA02517 Location: 1692-2097 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2202-2616 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2202-2616 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2640-2748 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2640-2748 bp Feature: gene Location: 2798-3157 bp Ori: EHV69074.1 Feature: domain Description: DDE_3 Location: 2849-3146 bp Feature: domain Description: DDE_3 Location: 2849-3 146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), DDE_3 (pfam13358)

Seq: AIFX01000058.1 Escherichia coli DEC6C gecDEC6C.contig.57_1, whole genome shotgun sequence (46978 bp)
Overview 1 RT 1: 14314-19308 bp 2 RT 2: 43701-46978 bp Neighborhood of RT #1 [14314, 19325] MFS_1 PHA02517 RVT-GII GIIM PHA02517 HTH_32 Neighborhood of RT #2 [43701, 46978] TnpB_IS66 PHA02517 RVT-GII GIIM InsG Feature: gene Location: 14314-15333 bp Ori: EHV60667.1 Feature: domain Description: MFS_1 Location: 14326-15199 bp Feature: domain Description: MFS_1 Location: 14 326-15199 bp Feature: gene Location: 15829-16308 bp Ori: EHV60668.1 Feature: domain Description: PHA02517 Location: 15889-16243 bp Feature: domain Description: PHA02517 Location: 15889-1624 3 bp Feature: gene Location: 16915-18423 bp Ori: EHV60669.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17173-17905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17173-17905 bp Feature: domain Description: GIIM Note: maturase Location: 17980-18178 bp Feature: domain Description: GIIM Note: maturase Location: 17980-18178 bp Feature: gene Location: 18540-18986 bp Ori: EHV60670.1 Feature: domain Description: PHA02517 Location: 18543-18984 bp Feature: domain Description: PHA02517 Location: 1854 3-18984 bp Feature: gene Location: 19026-19325 bp Ori: EHV60671.1 Feature: domain Description: HTH_32 Location: 19095-19308 bp Feature: domain Description: HTH_32 Location: 19095-19308 bp Feature: gene Location: 43701-44009 bp Ori: EHV60706.1 Feature: domain Description: TnpB_IS66 Location: 43728-44007 bp Feature: domain Description: TnpB_IS66 Location: 4 3728-4 4 007 bp Feature: gene Location: 44049-44495 bp Ori: EHV60707.1 Feature: domain Description: PHA02517 Location: 44052-44493 bp Feature: domain Description: PHA02517 Location: 4 4 052-4 4 4 93 bp Feature: gene Location: 44612-45445 bp Ori: EHV60708.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44618-44927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 618-4 4 927 bp Feature: domain Description: GIIM Note: maturase Location: 45002-45221 bp Feature: domain Description: GIIM Note: maturase Location: 4 5002-4 5221 bp Feature: gene Location: 46051-46978 bp Ori: EHV60709.1 Feature: domain Description: InsG Location: 46054-46978 bp Feature: domain Description: InsG Location: 4 6054 -4 6978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_1 (pfam07690), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), TnpB_IS66 (pfam05717), InsG (COG3385)

Seq: AIFX01000056.1 Escherichia coli DEC6C gecDEC6C.contig.55_1, whole genome shotgun sequence (8571 bp)
Overview 1 RT 1: 1-2588 bp Neighborhood of RT #1 [1, 2608] RVT-GII PHA02517 InsE Feature: gene Location: 1-1197 bp Ori: EHV60839.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 9-991 bp Feature: gene Location: 1804-2283 bp Ori: EHV60840.1 Feature: domain Description: PHA02517 Location: 1864-2218 bp Feature: domain Description: PHA025 17 Location: 1864-2218 bp Feature: gene Location: 2267-2608 bp Ori: EHV60841.1 Feature: domain Description: InsE Location: 2270-2588 bp Feature: domain Description: InsE Location: 2270-25 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: AIFX01000022.1 Escherichia coli DEC6C gecDEC6C.contig.21_1, whole genome shotgun sequence (6531 bp)
Overview 1 RT 1: 3713-6495 bp Neighborhood of RT #1 [3713, 6530] PHA02517 YkfC RVT-GII GIIM PHA02517 Feature: gene Location: 3713-3838 bp Ori: EHV68063.1 Feature: domain Description: PHA02517 Location: 3716-3824 bp Feature: domain Description: PHA02517 Location: 3716 -3824 bp Feature: gene Location: 4620-4952 bp Ori: EHV68058.1 Feature: domain Description: YkfC Location: 4623-4917 bp Feature: domain Description: YkfC Location: 46 23-4917 bp Feature: gene Location: 5294-6259 bp Ori: EHV68061.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5300-5609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5300-56 09 bp Feature: domain Description: GIIM Note: maturase Location: 5684-5882 bp Feature: domain Description: GIIM Note: maturase Location: 56 84-5882 bp Feature: gene Location: 6243-6530 bp Ori: EHV68060.1 Feature: domain Description: PHA02517 Location: 6246-6495 bp Feature: domain Description: PHA02517 Location: 6 246 -6 495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), YkfC (COG3344), RVT-GII, GIIM (pfam08388)

Seq: AIFX01000051.1 Escherichia coli DEC6C gecDEC6C.contig.50_1, whole genome shotgun sequence (98544 bp)
Overview 1 RT 1: 96771-98544 bp Neighborhood of RT #1 [96771, 98544] TehB DDE_Tnp_1 RVT-GII Feature: gene Location: 96771-96995 bp Ori: EHV62409.1 Feature: domain Description: TehB Location: 96774-96945 bp Feature: domain Description: TehB Location: 967 7 4-96945 bp Feature: gene Location: 97190-97906 bp Ori: EHV62410.1 Feature: domain Description: DDE_Tnp_1 Location: 97196-97838 bp Feature: domain Description: DDE_Tnp_1 Location: 97 196-97 838 bp Feature: gene Location: 98385-98544 bp Ori: EHV62411.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98493-98544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98493-98544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TehB (pfam03848), DDE_Tnp_1 (pfam01609), RVT-GII

Seq: AIFX01000023.1 Escherichia coli DEC6C gecDEC6C.contig.22_1, whole genome shotgun sequence (28106 bp)
Overview 1 RT 1: 24835-27986 bp Neighborhood of RT #1 [24835, 28063] PHA02517 RVT-GII GIIM InsG Feature: gene Location: 24835-25281 bp Ori: EHV67835.1 Feature: domain Description: PHA02517 Location: 24838-25279 bp Feature: domain Description: PHA02517 Location: 248 38 -25279 bp Feature: gene Location: 25398-25526 bp Feature: gene Location: 25567-26229 bp Ori: EHV67851.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25573-25882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25573-258 8 2 bp Feature: domain Description: GIIM Note: maturase Location: 25957-26176 bp Feature: domain Description: GIIM Note: maturase Location: 25957-26176 bp Feature: gene Location: 26951-28063 bp Ori: EHV67838.1 Feature: domain Description: InsG Location: 26954-27986 bp Feature: domain Description: InsG Location: 26954-2798 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsG (COG3385)

Seq: AIFX01000021.1 Escherichia coli DEC6C gecDEC6C.contig.20_1, whole genome shotgun sequence (19258 bp)
Overview 1 RT 1: 13959-18285 bp Neighborhood of RT #1 [13959, 18293] PRK13700 PHA02517 RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 13959-14264 bp Ori: EHV68144.1 Gene: traD Feature: domain Description: PRK13700 Location: 13962-14262 bp Feature: domain Description: PRK13700 Location: 139 62-14262 bp Feature: gene Location: 15008-15577 bp Ori: EHV68153.1 Feature: domain Description: PHA02517 Location: 15011-15416 bp Feature: domain Description: PHA02517 Location: 15011-15416 bp Feature: gene Location: 15694-17205 bp Ori: EHV68161.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15952-16684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159 52-16684 bp Feature: domain Description: GIIM Note: maturase Location: 16759-16957 bp Feature: domain Description: GIIM Note: maturase Location: 16759 -169 57 bp Feature: gene Location: 17813-18166 bp Ori: EHV68141.1 Feature: domain Description: PHA02517 Location: 17822-18101 bp Feature: domain Description: PHA02517 Location: 17822-18101 bp Feature: gene Location: 18150-18293 bp Ori: EHV68164.1 Feature: domain Description: PHA02517 Location: 18210-18285 bp Feature: domain Description: PHA02517 Location: 18210-18285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13700 (conjugal transfer protein TraD; Provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AIFX01000077.1 Escherichia coli DEC6C gecDEC6C.contig.76_1, whole genome shotgun sequence (191488 bp)
Overview 1 RT 1: 1-3816 bp Neighborhood of RT #1 [1, 3816] RVT-GII InsG RVT-GII GIIM PHA02517 Feature: gene Location: 1-160 bp Ori: EHV52472.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10 9-160 bp Feature: gene Location: 241-1353 bp Ori: EHV52473.1 Feature: domain Description: InsG Location: 244-1282 bp Feature: domain Description: InsG Location: 244-1282 bp Feature: gene Location: 2075-2908 bp Ori: EHV52474.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2081-2390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2081-2390 bp Feature: domain Description: GIIM Note: maturase Location: 2465-2684 bp Feature: domain Description: GIIM Note: maturase Location: 2465-2684 bp Feature: gene Location: 3061-3237 bp Ori: EHV52475.1 Feature: domain Description: PHA02517 Location: 3064-3163 bp Feature: domain Description: PHA02517 Location: 3064-3163 bp Feature: gene Location: 3559-3816 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsG (COG3385), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)