myRT

myRT report for GCA_000249675.2_ASM24967v2

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Seq: AIFZ01000025.1 Escherichia coli DEC6E gecDEC6E.contig.24_1, whole genome shotgun sequence (872368 bp)
Overview 1 RT 1: 483824-488268 bp 2 RT 2: 827446-832743 bp Neighborhood of RT #1 [483824, 488342] InsG RVT-GII GIIM HTH_38 Tra8 InsE Neighborhood of RT #2 [827446, 832743] HTH_17 RVT-Retrons Feature: gene Location: 483824-483964 bp Feature: gene Location: 483987-485099 bp Ori: EHV73871.1 Feature: domain Description: InsG Location: 483990-485028 bp Feature: domain Description: InsG Location: 483990-485028 bp Feature: gene Location: 485705-486538 bp Ori: EHV73872.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 485711-486020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48571 1 -486020 bp Feature: domain Description: GIIM Note: maturase Location: 486095-486314 bp Feature: domain Description: GIIM Note: maturase Location: 486095-48631 4 bp Feature: gene Location: 486908-488017 bp Ori: EHV73873.1 Feature: domain Description: HTH_38 Location: 486917-487031 bp Feature: domain Description: HTH_38 Location: 48691 7-487031 bp Feature: domain Description: Tra8 Location: 487067-487790 bp Feature: domain Description: Tra8 Location: 487067-487790 bp Feature: gene Location: 487974-488342 bp Ori: EHV73874.1 Feature: domain Description: InsE Location: 487983-488268 bp Feature: domain Description: InsE Location: 487983-488268 bp Feature: gene Location: 827446-827640 bp Ori: EHV74194.1 Feature: domain Description: HTH_17 Location: 827458-827617 bp Feature: domain Description: HTH_1 7 Location: 827458-82761 7 bp Feature: gene Location: 828092-829144 bp Feature: gene Location: 829831-830973 bp Ori: EHV74196.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 830053-830698 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 830053-830698 bp Feature: gene Location: 831208-832374 bp Feature: gene Location: 832567-832743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsG (COG3385), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826), InsE (COG2963), HTH_17 (pfam12728), RVT-Retrons