myRT

myRT report for GCA_000249695.2_ASM24969v2

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Seq: AIGA01000054.1 Escherichia coli DEC7A gecDEC7A.contig.54_1, whole genome shotgun sequence (62878 bp)
Overview 1 RT 1: 13569-17448 bp Neighborhood of RT #1 [13569, 17453] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 13569-14024 bp Ori: EHV74616.1 Gene: dut Feature: domain Description: dut Location: 13572-14019 bp Feature: domain Description: dut Location: 1 3572-1 401 9 bp Feature: gene Location: 14131-14727 bp Ori: EHV74617.1 Gene: slmA Feature: domain Description: slmA Location: 14137-14713 bp Feature: domain Description: slmA Location: 1 41 37-1 471 3 bp Feature: gene Location: 14773-15732 bp Ori: EHV74618.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14908-15457 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 4908-1 5457 bp Feature: gene Location: 16030-16671 bp Ori: EHV74619.1 Gene: pyrE Feature: domain Description: pyrE Location: 16033-16666 bp Feature: domain Description: pyrE Location: 1 6033-1 6666 bp Feature: gene Location: 16737-17453 bp Ori: EHV74620.1 Gene: rph Feature: domain Description: rph Location: 16740-17448 bp Feature: domain Description: rph Location: 1 6740-1 7448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AIGA01000028.1 Escherichia coli DEC7A gecDEC7A.contig.28_1, whole genome shotgun sequence (18227 bp)
Overview 1 RT 1: 9438-13781 bp Neighborhood of RT #1 [9438, 13912] PHA02517 RVT-GII GIIM DDE_Tnp_1 InsG Feature: gene Location: 9438-10211 bp Feature: gene Location: 10682-11068 bp Ori: EHV81914.1 Feature: domain Description: PHA02517 Location: 10685-11066 bp Feature: domain Description: PHA02 517 Location: 10685-11066 bp Feature: gene Location: 11245-12078 bp Ori: EHV81915.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11251-11560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 51-11560 bp Feature: domain Description: GIIM Note: maturase Location: 11635-11854 bp Feature: domain Description: GIIM Note: maturase Location: 11635-11854 bp Feature: gene Location: 12801-13061 bp Ori: EHV81916.1 Feature: domain Description: DDE_Tnp_1 Location: 12807-12993 bp Feature: domain Description: DDE_Tnp_1 Location: 12 807-12 993 bp Feature: gene Location: 13142-13912 bp Ori: EHV81917.1 Feature: domain Description: InsG Location: 13145-13781 bp Feature: domain Description: InsG Location: 13145-13781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), InsG (COG3385)

Seq: AIGA01000008.1 Escherichia coli DEC7A gecDEC7A.contig.7_1, whole genome shotgun sequence (18607 bp)
Overview 1 RT 1: 11338-15233 bp Neighborhood of RT #1 [11338, 15235] DUF1281 RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 11338-11697 bp Ori: EHV82860.1 Feature: domain Description: DUF1281 Location: 11347-11662 bp Feature: domain Description: DUF1281 Location: 113 47-11662 bp Feature: gene Location: 11916-12041 bp Feature: gene Location: 12302-13960 bp Ori: EHV82862.1 Feature: domain Description: RVT_N Location: 12314-12557 bp Feature: domain Description: RVT_N Location: 123 14-12557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12602-13238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12602-13 23 8 bp Feature: domain Description: GIIM Note: maturase Location: 13289-13523 bp Feature: domain Description: GIIM Note: maturase Location: 13 289-13 523 bp Feature: domain Description: HNHc Note: nucleases Location: 13754-13904 bp Feature: domain Description: HNHc Note: nucleases Location: 13 754-13 904 bp Feature: gene Location: 14042-14167 bp Feature: gene Location: 14582-15235 bp Ori: EHV82864.1 Feature: domain Description: PRK13699 Location: 14627-15233 bp Feature: domain Description: PRK13 699 Location: 14627-1523 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: AIGA01000042.1 Escherichia coli DEC7A gecDEC7A.contig.42_1, whole genome shotgun sequence (612303 bp)
Overview 1 RT 1: 568609-571763 bp Neighborhood of RT #1 [568609, 571780] PRK10724 SmpB RVT-UG11 PRK09678 Feature: gene Location: 568609-569046 bp Ori: EHV78227.1 Gene: yfjG Feature: domain Description: PRK10724 Location: 568612-569044 bp Feature: domain Description: PRK10724 Location: 568612-56904 4 bp Feature: gene Location: 569217-569699 bp Ori: EHV78228.1 Gene: smpB Feature: domain Description: SmpB Location: 569247-569694 bp Feature: domain Description: SmpB Location: 56924 7-569694 bp Feature: gene Location: 570385-571158 bp Ori: EHV78229.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 570520-570973 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 570520-570973 bp Feature: gene Location: 571127-571300 bp Feature: gene Location: 571562-571780 bp Ori: EHV78231.1 Feature: domain Description: PRK09678 Location: 571565-571763 bp Feature: domain Description: PRK09678 Location: 571565-571763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: AIGA01000046.1 Escherichia coli DEC7A gecDEC7A.contig.46_1, whole genome shotgun sequence (56640 bp)
Overview 1 RT 1: 39985-43064 bp Neighborhood of RT #1 [39985, 43216] InsE RVT_N RVT-GII TnpB_IS66 HTH_23 InsE Feature: gene Location: 39985-40404 bp Ori: EHV76851.1 Feature: domain Description: InsE Location: 40000-40384 bp Feature: domain Description: InsE Location: 40000-40384 bp Feature: gene Location: 40550-40675 bp Feature: gene Location: 40737-41660 bp Ori: EHV76853.1 Feature: domain Description: RVT_N Location: 40785-41028 bp Feature: domain Description: RVT_N Location: 40785 -41028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41073-41643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41073-41643 bp Feature: gene Location: 42258-42569 bp Ori: EHV76854.1 Feature: domain Description: TnpB_IS66 Location: 42285-42564 bp Feature: domain Description: TnpB_IS66 Location: 42285 -425 64 bp Feature: gene Location: 42569-43216 bp Ori: EHV76855.1 Feature: domain Description: HTH_23 Location: 42620-42719 bp Feature: domain Description: HTH_23 Location: 42620-42719 bp Feature: domain Description: InsE Location: 42848-43064 bp Feature: domain Description: InsE Location: 42848-43064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT_N (pfam13655), RVT-GII, TnpB_IS66 (pfam05717), HTH_23 (pfam13384)