myRT

myRT report for GCA_000249735.2_ASM24973v2

Download annotations/find similar RTs

Seq: AIGC01000043.1 Escherichia coli DEC7C gecDEC7C.contig.42_1, whole genome shotgun sequence (20017 bp)
Overview 1 RT 1: 16494-20017 bp Neighborhood of RT #1 [16494, 20017] PRK13699 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 16494-16715 bp Feature: gene Location: 16716-17369 bp Ori: EHV82675.1 Feature: domain Description: PRK13699 Location: 16761-17367 bp Feature: domain Description: PRK1 3699 Location: 1 6761 -1 7367 bp Feature: gene Location: 17991-19649 bp Ori: EHV82676.1 Feature: domain Description: RVT_N Location: 18003-18246 bp Feature: domain Description: RVT_N Location: 1 8003-1 8246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18291-18927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8291 -1 8927 bp Feature: domain Description: GIIM Note: maturase Location: 18978-19212 bp Feature: domain Description: GIIM Note: maturase Location: 1 8978-1 921 2 bp Feature: domain Description: HNHc Note: nucleases Location: 19443-19593 bp Feature: domain Description: HNHc Note: nucleases Location: 1 9443-1 9593 bp Feature: gene Location: 19910-20017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AIGC01000016.1 Escherichia coli DEC7C gecDEC7C.contig.15_1, whole genome shotgun sequence (72526 bp)
Overview 1 RT 1: 28113-32083 bp Neighborhood of RT #1 [28113, 32154] PRK10724 SmpB RVT-UG11 InsG Feature: gene Location: 28113-28550 bp Ori: EHV85512.1 Feature: domain Description: PRK10724 Location: 28116-28548 bp Feature: domain Description: PRK1072 4 Location: 2 8116-2 8548 bp Feature: gene Location: 28721-29185 bp Ori: EHV85513.1 Gene: smpB Feature: domain Description: SmpB Location: 28751-29126 bp Feature: domain Description: SmpB Location: 2 8751-2 912 6 bp Feature: gene Location: 29888-30661 bp Ori: EHV85514.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 30023-30476 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 3002 3-30476 bp Feature: gene Location: 30630-30803 bp Feature: gene Location: 31042-32154 bp Ori: EHV85516.1 Feature: domain Description: InsG Location: 31045-32083 bp Feature: domain Description: InsG Location: 31045-32 083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, InsG (COG3385)

Seq: AIGC01000020.1 Escherichia coli DEC7C gecDEC7C.contig.19_1, whole genome shotgun sequence (98660 bp)
Overview 1 RT 1: 48144-52023 bp Neighborhood of RT #1 [48144, 52028] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 48144-48599 bp Ori: EHV83986.1 Feature: domain Description: dut Location: 48147-48594 bp Feature: domain Description: dut Location: 48147-48594 bp Feature: gene Location: 48706-49302 bp Ori: EHV83987.1 Gene: ttk Feature: domain Description: slmA Location: 48712-49288 bp Feature: domain Description: slmA Location: 48712-49288 bp Feature: gene Location: 49348-50307 bp Ori: EHV83988.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49483-50032 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49483 -5003 2 bp Feature: gene Location: 50605-51246 bp Ori: EHV83989.1 Gene: pyrE Feature: domain Description: pyrE Location: 50608-51241 bp Feature: domain Description: pyrE Location: 50608-51241 bp Feature: gene Location: 51312-52028 bp Ori: EHV83990.1 Gene: rph Feature: domain Description: rph Location: 51315-52023 bp Feature: domain Description: rph Location: 513 15-52023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)