myRT

myRT report for GCA_000249755.2_ASM24975v2

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Seq: AIGD01000018.1 Escherichia coli DEC7D gecDEC7D.contig.17_1, whole genome shotgun sequence (132442 bp)
Overview 1 RT 1: 23628-28847 bp 2 RT 2: 39958-43169 bp Neighborhood of RT #1 [23628, 28847] PHA02517 RVT-GII GIIM Zn_Tnp_IS91 Y2_Tnp Neighborhood of RT #2 [39958, 43189] HTH_23 InsE TnpB_IS66 RVT_N RVT-GII InsE Feature: gene Location: 23628-24401 bp Feature: gene Location: 24872-25258 bp Ori: EHV89162.1 Feature: domain Description: PHA02517 Location: 24875-25256 bp Feature: domain Description: PHA0251 7 Location: 24875-25256 bp Feature: gene Location: 25435-26268 bp Ori: EHV89163.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25441-25750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25441 -25750 bp Feature: domain Description: GIIM Note: maturase Location: 25825-26044 bp Feature: domain Description: GIIM Note: maturase Location: 25825-26044 bp Feature: gene Location: 27295-28482 bp Ori: EHV89164.1 Feature: domain Description: Zn_Tnp_IS91 Location: 27337-27607 bp Feature: domain Description: Zn_Tnp_IS91 Location: 27337-27607 bp Feature: domain Description: Y2_Tnp Location: 27721-28261 bp Feature: domain Description: Y2_Tnp Location: 27721 -28261 bp Feature: gene Location: 28482-28847 bp Feature: gene Location: 39958-40605 bp Ori: EHV89179.1 Feature: domain Description: HTH_23 Location: 40009-40108 bp Feature: domain Description: HTH_23 Location: 40009-401 08 bp Feature: domain Description: InsE Location: 40237-40453 bp Feature: domain Description: InsE Location: 40237-40453 bp Feature: gene Location: 40605-40916 bp Ori: EHV89180.1 Feature: domain Description: TnpB_IS66 Location: 40632-40911 bp Feature: domain Description: TnpB_IS66 Location: 40632-4091 1 bp Feature: gene Location: 41514-42437 bp Ori: EHV89181.1 Feature: domain Description: RVT_N Location: 41562-41805 bp Feature: domain Description: RVT_N Location: 41 562-41 805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41850-42420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 850-42420 bp Feature: gene Location: 42499-42624 bp Feature: gene Location: 42770-43189 bp Ori: EHV89183.1 Feature: domain Description: InsE Location: 42785-43169 bp Feature: domain Description: InsE Location: 42785-431 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), HTH_23 (pfam13384), InsE (COG2963), TnpB_IS66 (pfam05717), RVT_N (pfam13655)

Seq: AIGD01000032.1 Escherichia coli DEC7D gecDEC7D.contig.31_1, whole genome shotgun sequence (83233 bp)
Overview 1 RT 1: 10124-14019 bp Neighborhood of RT #1 [10124, 14021] DUF1281 RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 10124-10483 bp Ori: EHV84751.1 Feature: domain Description: DUF1281 Location: 10133-10448 bp Feature: domain Description: DUF12 81 Location: 10133-10448 bp Feature: gene Location: 10702-10827 bp Feature: gene Location: 11088-12746 bp Ori: EHV84778.1 Feature: domain Description: RVT_N Location: 11100-11343 bp Feature: domain Description: RVT_N Location: 11100-11343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11388-12024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11388-12 02 4 bp Feature: domain Description: GIIM Note: maturase Location: 12075-12309 bp Feature: domain Description: GIIM Note: maturase Location: 12 075-12 309 bp Feature: domain Description: HNHc Note: nucleases Location: 12540-12690 bp Feature: domain Description: HNHc Note: nucleases Location: 12 540-12 690 bp Feature: gene Location: 12828-12953 bp Feature: gene Location: 13368-14021 bp Ori: EHV84717.1 Feature: domain Description: PRK13699 Location: 13413-14019 bp Feature: domain Description: PRK13699 Location: 13413-14019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: AIGD01000016.1 Escherichia coli DEC7D gecDEC7D.contig.15_1, whole genome shotgun sequence (67184 bp)
Overview 1 RT 1: 22942-26913 bp Neighborhood of RT #1 [22942, 26984] PRK10724 SmpB RVT-UG11 InsG Feature: gene Location: 22942-23379 bp Ori: EHV90279.1 Feature: domain Description: PRK10724 Location: 22945-23377 bp Feature: domain Description: PRK10724 Location: 22945-23 3 77 bp Feature: gene Location: 23550-24032 bp Ori: EHV90280.1 Gene: smpB Feature: domain Description: SmpB Location: 23580-24027 bp Feature: domain Description: SmpB Location: 23 580-24027 bp Feature: gene Location: 24718-25491 bp Ori: EHV90281.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24853-25306 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 24853 -253 06 bp Feature: gene Location: 25460-25633 bp Feature: gene Location: 25872-26984 bp Ori: EHV90283.1 Feature: domain Description: InsG Location: 25875-26913 bp Feature: domain Description: InsG Location: 25875-26913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, InsG (COG3385)

Seq: AIGD01000023.1 Escherichia coli DEC7D gecDEC7D.contig.22_1, whole genome shotgun sequence (361103 bp)
Overview 1 RT 1: 163079-166958 bp Neighborhood of RT #1 [163079, 166963] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 163079-163534 bp Ori: EHV87350.1 Feature: domain Description: dut Location: 163082-163529 bp Feature: domain Description: dut Location: 163082-163529 bp Feature: gene Location: 163641-164237 bp Ori: EHV87351.1 Gene: ttk Feature: domain Description: slmA Location: 163647-164223 bp Feature: domain Description: slmA Location: 16364 7-164 223 bp Feature: gene Location: 164283-165242 bp Ori: EHV87352.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 164418-164967 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 164 4 18-164 967 bp Feature: gene Location: 165540-166181 bp Ori: EHV87353.1 Gene: pyrE Feature: domain Description: pyrE Location: 165543-166176 bp Feature: domain Description: pyrE Location: 16554 3-166176 bp Feature: gene Location: 166247-166963 bp Ori: EHV87354.1 Gene: rph Feature: domain Description: rph Location: 166250-166958 bp Feature: domain Description: rph Location: 166250-166958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)