myRT

myRT report for GCA_000250215.2_ASM25021v2

Download annotations/find similar RTs

Seq: AIHA01000045.1 Escherichia coli DEC12A gecDEC12A.contig.44_1, whole genome shotgun sequence (179940 bp)
Overview 1 RT 1: 166945-174422 bp Neighborhood of RT #1 [166945, 174433] HTH_38 Tra8 PHA02517 RVT-GII GIIM PRK09928 PHA02517 Feature: gene Location: 166945-168096 bp Feature: domain Description: HTH_38 Location: 166954-167068 bp Feature: domain Description: HTH_38 Location: 1 66954-1 67068 bp Feature: domain Description: Tra8 Location: 167104-168085 bp Feature: domain Description: Tra8 Location: 1 671 04-1 68085 bp Feature: gene Location: 168413-168652 bp Feature: domain Description: PHA02517 Location: 168416-168587 bp Feature: domain Description: PHA0251 7 Location: 1 6841 6-1 68587 bp Feature: gene Location: 169259-170767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169517-170249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6951 7-1 70249 bp Feature: domain Description: GIIM Note: maturase Location: 170324-170522 bp Feature: domain Description: GIIM Note: maturase Location: 1 70324-1 70522 bp Feature: gene Location: 171464-173467 bp Feature: domain Description: PRK09928 Location: 171485-173465 bp Feature: domain Description: PRK09928 Location: 1 71 485-1 73465 bp Feature: gene Location: 173615-174433 bp Feature: domain Description: PHA02517 Location: 173630-174422 bp Feature: domain Description: PHA0251 7 Location: 1 73630-1 74422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK09928 (choline transport protein BetT; Provisional)

Seq: AIHA01000033.1 Escherichia coli DEC12A gecDEC12A.contig.32_1, whole genome shotgun sequence (417246 bp)
Overview 1 RT 1: 403637-407064 bp Neighborhood of RT #1 [403637, 407064] PRK13889 RVT-Retrons Feature: gene Location: 403637-405139 bp Feature: domain Description: PRK13889 Location: 403640-404219 bp Feature: domain Description: PRK13889 Location: 403640-4042 19 bp Feature: gene Location: 405216-405548 bp Feature: gene Location: 405692-405931 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 405695-405914 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 405695-405914 bp Feature: gene Location: 406678-406893 bp Feature: gene Location: 406903-407064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons