myRT

myRT report for GCA_000250295.2_ASM25029v2

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Seq: AIHE01000032.1 Escherichia coli DEC12E gecDEC12E.contig.31_1, whole genome shotgun sequence (410840 bp)
Overview 1 RT 1: 380659-385034 bp Neighborhood of RT #1 [380659, 385034] TraD PRK13889 RVT-Retrons Feature: gene Location: 380659-380970 bp Feature: domain Description: TraD Location: 380773-380947 bp Feature: domain Description: TraD Location: 380773-380947 bp Feature: gene Location: 381777-383279 bp Feature: domain Description: PRK13889 Location: 381780-382359 bp Feature: domain Description: PRK1 3889 Location: 381 780-382359 bp Feature: gene Location: 383356-384288 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 383368-383881 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 383368-383881 bp Feature: gene Location: 384290-384454 bp Feature: gene Location: 384819-385034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraD (pfam06412), PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons

Seq: AIHE01000048.1 Escherichia coli DEC12E gecDEC12E.contig.47_1, whole genome shotgun sequence (97696 bp)
Overview 1 RT 1: 1-5132 bp Neighborhood of RT #1 [1, 5143] PRK13732 RVT-GII GIIM YjcB YjcC Feature: gene Location: 1-147 bp Feature: gene Location: 212-739 bp Feature: domain Description: PRK13732 Location: 215-737 bp Feature: domain Description: PRK13732 Location: 2 15-737 bp Feature: gene Location: 1303-2640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1606-2239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1606-2 2 39 bp Feature: domain Description: GIIM Note: maturase Location: 2311-2533 bp Feature: domain Description: GIIM Note: maturase Location: 2 311-2 533 bp Feature: gene Location: 2846-3127 bp Feature: domain Description: YjcB Location: 2849-3116 bp Feature: domain Description: YjcB Location: 2 849-3116 bp Feature: gene Location: 3557-5143 bp Feature: domain Description: YjcC Location: 3560-5132 bp Feature: domain Description: YjcC Location: 3560-5132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK13732 (single-stranded DNA-binding protein; Provisional), YjcC (COG4943)