myRT

myRT report for GCA_000250575.2_ASM25057v2

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Seq: AIHS01000014.1 Escherichia coli DEC15E gecDEC15E.contig.13_1, whole genome shotgun sequence (24422 bp)
Overview 1 RT 1: 1-7296 bp Neighborhood of RT #1 [1, 7298] PRK15223 PHA02517 RVT-GII GIIM HTH_Tnp_1 HTH_Tnp_1 PRK09409 Feature: gene Location: 1-2193 bp Feature: domain Description: PRK15223 Location: 13-2188 bp Feature: domain Description: PRK1 5223 Location: 1 3-21 88 bp Feature: gene Location: 3514-3885 bp Feature: domain Description: PHA02517 Location: 3517-3883 bp Feature: domain Description: PHA0251 7 Location: 351 7-3883 bp Feature: gene Location: 4077-5585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4335-5067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4335-5067 bp Feature: domain Description: GIIM Note: maturase Location: 5142-5340 bp Feature: domain Description: GIIM Note: maturase Location: 51 42-5340 bp Feature: gene Location: 6191-6931 bp Feature: domain Description: HTH_Tnp_1 Location: 6203-6401 bp Feature: domain Description: HTH_Tnp_1 Location: 6203-6401 bp Feature: domain Description: HTH_Tnp_1 Location: 6506-6599 bp Feature: domain Description: HTH_Tnp_1 Location: 6506-6599 bp Feature: gene Location: 7062-7298 bp Feature: domain Description: PRK09409 Location: 7128-7296 bp Feature: domain Description: PRK09409 Location: 71 28-7296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15223 (fimbrial biogenesis outer membrane usher protein), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), PRK09409 (IS2 transposase TnpB; Reviewed)

Seq: AIHS01000046.1 Escherichia coli DEC15E gecDEC15E.contig.45_1, whole genome shotgun sequence (187610 bp)
Overview 1 RT 1: 24326-28220 bp Neighborhood of RT #1 [24326, 28220] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 24326-24445 bp Feature: gene Location: 25135-25506 bp Feature: domain Description: PHA02517 Location: 25138-25504 bp Feature: domain Description: PHA02 517 Location: 2 5138-2 5504 bp Feature: gene Location: 25698-27206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25956-26688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5956-2 6688 bp Feature: domain Description: GIIM Note: maturase Location: 26763-26961 bp Feature: domain Description: GIIM Note: maturase Location: 2 6763-2 6961 bp Feature: gene Location: 27813-28094 bp Feature: domain Description: PHA02517 Location: 27816-28029 bp Feature: domain Description: PHA02 517 Location: 2 7816-2 802 9 bp Feature: gene Location: 28107-28220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AIHS01000055.1 Escherichia coli DEC15E gecDEC15E.contig.54_1, whole genome shotgun sequence (3717 bp)
Overview 1 RT 1: 168-3079 bp Neighborhood of RT #1 [168, 3087] lnt PRK09413 RVT-GII Feature: gene Location: 168-659 bp Feature: domain Description: lnt Location: 234-483 bp Feature: domain Description: lnt Location: 23 4-483 bp Feature: gene Location: 1554-1751 bp Feature: domain Description: PRK09413 Location: 1557-1719 bp Feature: domain Description: PRK09413 Location: 1557-1719 bp Feature: gene Location: 2227-3087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2548-3079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2548-3 079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), lnt (TIGR00546), RVT-GII