myRT

myRT report for GCA_000252955.1_ASM25295v1

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Seq: FN667742.1 Xenorhabdus nematophila ATCC 19061 chromosome, complete genome (4432590 bp)
Overview 1 RT 1: 115678-118442 bp 2 RT 2: 258325-266449 bp 3 RT 3: 1735937-1741406 bp 4 RT 4: 1814987-1819740 bp 5 RT 5: 2571557-2574318 bp 6 RT 6: 3566588-3569912 bp 7 RT 7: 4102119-4104883 bp 8 RT 8: 4220367-4223753 bp 9 RT 9: 4368933-4375792 bp Neighborhood of RT #1 [115678, 118513] RVT-GII RVT-GII COG3547 Neighborhood of RT #2 [258325, 266454] EF-Tu RVT-GII RVT-GII Recombinase Zn_ribbon_recom RVT-CRISPR-like RVT-GII GIIM RVT-GII GIIM PRK10509 PRK10635 Neighborhood of RT #3 [1735937, 1741438] DDE_3 COG3547 RVT-GII RVT-GII GIIM GIIM COG3547 Neighborhood of RT #4 [1814987, 1819772] RVT-GII COG3547 COG3547 Neighborhood of RT #5 [2571557, 2574318] COG3547 RVT-GII Neighborhood of RT #6 [3566588, 3569914] DDE_3 DDE_3 RVT-Retrons COG3440 potD Neighborhood of RT #7 [4102119, 4104883] RVT-GII GIIM COG3547 Neighborhood of RT #8 [4220367, 4223818] GIIM GIIM RVT-GII COG3547 DDE_3 Neighborhood of RT #9 [4368933, 4375827] RVT-GII RVT-GII COG3547 DDE_Tnp_Tn3 RVT-GII GIIM MFS_MdtH_MDR_like Feature: gene Location: 115678-116052 bp Feature: gene Location: 115816-115965 bp Feature: gene Location: 115976-116347 bp Ori: CBJ88210.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116261-116327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 6261 -1 1 6327 bp Feature: gene Location: 116607-116852 bp Ori: CBJ88211.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116613-116850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 661 3-1 1 6850 bp Feature: gene Location: 117273-117527 bp Feature: gene Location: 117545-118513 bp Ori: CBJ88213.1 Feature: domain Description: COG3547 Location: 117563-118442 bp Feature: domain Description: COG3547 Location: 1 1 7563-1 1 8442 bp Feature: gene Location: 258325-259509 bp Ori: CBJ88379.1 Gene: tufB Feature: domain Description: EF-Tu Location: 258328-259504 bp Feature: domain Description: EF-Tu Location: 258328-259504 bp Feature: gene Location: 260001-260408 bp Feature: gene Location: 260275-260439 bp Ori: CBJ88381.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260284-260437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260284-260437 bp Feature: gene Location: 260526-260702 bp Ori: CBJ88382.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260529-260667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260529-260667 bp Feature: gene Location: 260565-260990 bp Feature: gene Location: 260983-261816 bp Feature: domain Description: Recombinase Location: 261019-261385 bp Feature: domain Description: Recombinase Location: 261 01 9-261 385 bp Feature: domain Description: Zn_ribbon_recom Location: 261430-261613 bp Feature: domain Description: Zn_ribbon_recom Location: 261 430-261 61 3 bp Feature: gene Location: 262194-262508 bp Feature: gene Location: 262459-262746 bp Feature: gene Location: 262891-263019 bp Ori: CBJ88390.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 262906-262993 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 262906-262993 bp Feature: gene Location: 263026-263157 bp Feature: gene Location: 263113-263307 bp Feature: gene Location: 263397-264290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263751-264276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263751 -264276 bp Feature: gene Location: 264477-264815 bp Feature: domain Description: GIIM Note: maturase Location: 264498-264717 bp Feature: domain Description: GIIM Note: maturase Location: 264498-26471 7 bp Feature: gene Location: 264812-265504 bp Ori: CBJ88395.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264890-265025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264890-265025 bp Feature: domain Description: GIIM Note: maturase Location: 265073-265298 bp Feature: domain Description: GIIM Note: maturase Location: 265073-265298 bp Feature: gene Location: 265708-265902 bp Ori: CBJ88396.1 Gene: bfd Feature: domain Description: PRK10509 Location: 265711-265900 bp Feature: domain Description: PRK1 0509 Location: 26571 1 -265900 bp Feature: gene Location: 265978-266454 bp Ori: CBJ88397.1 Gene: bfr Feature: domain Description: PRK10635 Location: 265981-266449 bp Feature: domain Description: PRK1 0635 Location: 265981 -266449 bp Feature: gene Location: 1735937-1736281 bp Ori: CBJ89864.1 Feature: domain Description: DDE_3 Location: 1735946-1736204 bp Feature: domain Description: DDE_3 Location: 1 735946-1 736204 bp Feature: gene Location: 1736748-1737140 bp Ori: CBJ89865.1 Feature: domain Description: COG3547 Location: 1736769-1737078 bp Feature: domain Description: COG3547 Location: 1 736769-1 737078 bp Feature: gene Location: 1737777-1738337 bp Ori: CBJ89866.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1737825-1738311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 737825-1 73831 1 bp Feature: gene Location: 1738344-1738475 bp Feature: gene Location: 1738431-1738646 bp Feature: gene Location: 1738743-1740077 bp Ori: CBJ89869.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1739097-1739754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 739097-1 739754 bp Feature: domain Description: GIIM Note: maturase Location: 1739835-1740054 bp Feature: domain Description: GIIM Note: maturase Location: 1 739835-1 740054 bp Feature: gene Location: 1740423-1740782 bp Ori: CBJ89870.1 Feature: domain Description: GIIM Note: maturase Location: 1740462-1740666 bp Feature: domain Description: GIIM Note: maturase Location: 1 740462-1 740666 bp Feature: gene Location: 1740893-1741438 bp Ori: CBJ89871.1 Feature: domain Description: COG3547 Location: 1740929-1741406 bp Feature: domain Description: COG3547 Location: 1 740929-1 741 406 bp Feature: gene Location: 1814987-1815478 bp Feature: gene Location: 1815760-1815894 bp Feature: gene Location: 1816255-1816971 bp Ori: CBJ89958.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1816420-1816966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 6420-1 81 6966 bp Feature: gene Location: 1817508-1818476 bp Ori: CBJ89959.1 Feature: domain Description: COG3547 Location: 1817535-1818429 bp Feature: domain Description: COG3547 Location: 1 81 7535-1 81 8429 bp Feature: gene Location: 1818750-1819772 bp Ori: CBJ89960.1 Feature: domain Description: COG3547 Location: 1818762-1819740 bp Feature: domain Description: COG3547 Location: 1 81 8762-1 81 9740 bp Feature: gene Location: 2571557-2571724 bp Feature: gene Location: 2571709-2572542 bp Ori: CBJ90653.1 Feature: domain Description: COG3547 Location: 2571721-2572516 bp Feature: domain Description: COG3547 Location: 2571 721 -257251 6 bp Feature: gene Location: 2572710-2574044 bp Ori: CBJ90654.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2572995-2573682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2572995-2573682 bp Feature: gene Location: 2574055-2574297 bp Feature: gene Location: 2574115-2574318 bp Feature: gene Location: 3566588-3566824 bp Ori: CBJ91728.1 Feature: domain Description: DDE_3 Location: 3566594-3566807 bp Feature: domain Description: DDE_3 Location: 3566594-3566807 bp Feature: gene Location: 3566821-3567075 bp Ori: CBJ91729.1 Feature: domain Description: DDE_3 Location: 3566845-3566965 bp Feature: domain Description: DDE_3 Location: 3566845-3566965 bp Feature: gene Location: 3567020-3567520 bp Ori: CBJ91730.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3567122-3567422 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35671 22-3567422 bp Feature: gene Location: 3567926-3568798 bp Ori: CBJ91731.1 Feature: domain Description: COG3440 Location: 3567941-3568790 bp Feature: domain Description: COG3440 Location: 3567941 -3568790 bp Feature: gene Location: 3568850-3569914 bp Ori: CBJ91732.1 Gene: potD Feature: domain Description: potD Location: 3568865-3569912 bp Feature: domain Description: potD Location: 3568865-356991 2 bp Feature: gene Location: 4102119-4102472 bp Feature: gene Location: 4102140-4102385 bp Feature: gene Location: 4102396-4103730 bp Ori: CBJ92285.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4102681-4103365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 02681 -41 03365 bp Feature: domain Description: GIIM Note: maturase Location: 4103497-4103641 bp Feature: domain Description: GIIM Note: maturase Location: 41 03497-41 03641 bp Feature: gene Location: 4103899-4104711 bp Ori: CBJ92286.1 Feature: domain Description: COG3547 Location: 4103911-4104706 bp Feature: domain Description: COG3547 Location: 41 0391 1 -41 04706 bp Feature: gene Location: 4104614-4104883 bp Feature: gene Location: 4220367-4220726 bp Ori: CBJ92417.1 Feature: domain Description: GIIM Note: maturase Location: 4220406-4220610 bp Feature: domain Description: GIIM Note: maturase Location: 4220406-422061 0 bp Feature: gene Location: 4221072-4221335 bp Feature: domain Description: GIIM Note: maturase Location: 4221093-4221312 bp Feature: domain Description: GIIM Note: maturase Location: 4221 093-4221 31 2 bp Feature: gene Location: 4221523-4222416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4221877-4222402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4221 877-4222402 bp Feature: gene Location: 4222758-4223150 bp Ori: CBJ92420.1 Feature: domain Description: COG3547 Location: 4222779-4223088 bp Feature: domain Description: COG3547 Location: 4222779-4223088 bp Feature: gene Location: 4223486-4223818 bp Feature: domain Description: DDE_3 Location: 4223513-4223753 bp Feature: domain Description: DDE_3 Location: 422351 3-4223753 bp Feature: gene Location: 4368933-4369283 bp Feature: gene Location: 4368954-4369196 bp Feature: gene Location: 4369156-4369926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4369492-4369921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4369492-4369921 bp Feature: gene Location: 4369969-4370541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4369972-4370179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4369972-43701 79 bp Feature: gene Location: 4369879-4370007 bp Feature: gene Location: 4370710-4371522 bp Ori: CBJ92590.1 Feature: domain Description: COG3547 Location: 4370722-4371517 bp Feature: domain Description: COG3547 Location: 4370722-4371 51 7 bp Feature: gene Location: 4373471-4373647 bp Ori: CBJ92593.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 4373480-4373582 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4373480-4373582 bp Feature: gene Location: 4374234-4374683 bp Feature: gene Location: 4374366-4375328 bp Ori: CBJ92595.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4374414-4375071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437441 4-4375071 bp Feature: domain Description: GIIM Note: maturase Location: 4375152-4375320 bp Feature: domain Description: GIIM Note: maturase Location: 43751 52-4375320 bp Feature: gene Location: 4374723-4374923 bp Feature: gene Location: 4375522-4375827 bp Ori: CBJ92597.1 Feature: domain Description: MFS_MdtH_MDR_like Location: 4375543-4375792 bp Feature: domain Description: MFS_MdtH_MDR_like Location: 4375543-4375792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3547 (Transposase ), EF-Tu (TIGR00485), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-CRISPR, GIIM (pfam08388), PRK10509 (bacterioferritin-associated ferredoxin; Provisional), PRK10635 (bacterioferritin; Provisional), DDE_3 (pfam13358)
RVT-Retrons, COG3440 (Predicted restriction endonuclease ), potD (PRK09501), DDE_Tnp_Tn3 (pfam01526), MFS_MdtH_MDR_like (cd17329)