myRT

myRT report for GCA_000255675.1_ASM25567v1

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Seq: JH621477.1 Singulisphaera acidiphila DSM 18658 genomic scaffold Scaffold1, whole genome shotgun sequence (1801088 bp)
Overview 1 RT 1: 175046-175307 bp 2 RT 2: 232449-237817 bp 3 RT 3: 1526700-1532654 bp Neighborhood of RT #1 [175046, 175372] RVT-GII Neighborhood of RT #2 [232449, 237825] phage_DnaB RVT-CRISPR-like COG3415 DDE_3 Neighborhood of RT #3 [1526700, 1532785] RVT-GII PinE Zn_ribbon_recom HTH_23 HTH_23 SGSH Feature: gene Location: 175046-175372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175193-175307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 751 93-1 75307 bp Feature: gene Location: 232449-232718 bp Feature: gene Location: 232988-234898 bp Feature: domain Description: phage_DnaB Location: 233567-234083 bp Feature: domain Description: phage_DnaB Location: 233567-234083 bp Feature: gene Location: 235244-236542 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 235643-236201 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 235643-236201 bp Feature: gene Location: 237026-237247 bp Feature: domain Description: COG3415 Location: 237029-237194 bp Feature: domain Description: COG341 5 Location: 237029-2371 94 bp Feature: gene Location: 237430-237825 bp Feature: domain Description: DDE_3 Location: 237454-237817 bp Feature: domain Description: DDE_3 Location: 237454-23781 7 bp Feature: gene Location: 1526700-1527239 bp Feature: gene Location: 1527303-1527632 bp Feature: gene Location: 1527838-1528002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1527841-1527976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 527841 -1 527976 bp Feature: gene Location: 1528410-1530470 bp Feature: domain Description: PinE Location: 1528470-1529097 bp Feature: domain Description: PinE Location: 1 528470-1 529097 bp Feature: domain Description: Zn_ribbon_recom Location: 1529406-1529562 bp Feature: domain Description: Zn_ribbon_recom Location: 1 529406-1 529562 bp Feature: domain Description: HTH_23 Location: 1530087-1530156 bp Feature: domain Description: HTH_23 Location: 1 530087-1 5301 56 bp Feature: domain Description: HTH_23 Location: 1530285-1530345 bp Feature: domain Description: HTH_23 Location: 1 530285-1 530345 bp Feature: gene Location: 1531322-1532785 bp Feature: domain Description: SGSH Location: 1531412-1532654 bp Feature: domain Description: SGSH Location: 1 531 41 2-1 532654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, phage_DnaB (TIGR03600), RVT-CRISPR, COG3415 (Transposase ), DDE_3 (pfam13358), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_23 (pfam13384), SGSH (cd16027)

Seq: JH621478.1 Singulisphaera acidiphila DSM 18658 genomic scaffold Scaffold2, whole genome shotgun sequence (1768561 bp)
Overview 1 RT 1: 331187-337782 bp Neighborhood of RT #1 [331187, 337982] SWIM WGR_MMR_like RVT-Retrons PT-HINT MGAT2 MGAT2 Feature: gene Location: 331187-331534 bp Feature: gene Location: 331531-333411 bp Feature: domain Description: SWIM Location: 333037-333127 bp Feature: domain Description: SWIM Location: 333037-33312 7 bp Feature: domain Description: WGR_MMR_like Location: 333217-333391 bp Feature: domain Description: WGR_MMR_like Location: 3332 17-333391 bp Feature: gene Location: 333417-334718 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 333879-334503 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 333879-334503 bp Feature: gene Location: 334796-336814 bp Feature: domain Description: PT-HINT Location: 336365-336737 bp Feature: domain Description: PT-HINT Location: 336365-336737 bp Feature: gene Location: 337263-337982 bp Feature: domain Description: MGAT2 Location: 337278-337452 bp Feature: domain Description: MGAT2 Location: 3372 78-337452 bp Feature: domain Description: MGAT2 Location: 337521-337782 bp Feature: domain Description: MGAT2 Location: 33752 1-337782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SWIM (pfam04434), WGR_MMR_like (cd07996), RVT-Retrons, PT-HINT (pfam07591), MGAT2 (pfam05060)

Seq: JH621479.1 Singulisphaera acidiphila DSM 18658 genomic scaffold Scaffold3, whole genome shotgun sequence (1495668 bp)
Overview 1 RT 1: 995093-1002024 bp Neighborhood of RT #1 [995093, 1002068] ChoK-like ETNK_euk PLN02336 RVT-Retrons DAP2 Feature: gene Location: 995093-996040 bp Feature: domain Description: ChoK-like Location: 995210-995804 bp Feature: domain Description: ChoK-like Location: 995210-995804 bp Feature: domain Description: ETNK_euk Location: 995888-996002 bp Feature: domain Description: ETNK_euk Location: 995888-996002 bp Feature: gene Location: 996227-997036 bp Feature: domain Description: PLN02336 Location: 996245-997028 bp Feature: domain Description: PLN023 3 6 Location: 996245-997028 bp Feature: gene Location: 997390-998739 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 997870-998512 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 997870-998512 bp Feature: gene Location: 998817-1000073 bp Feature: gene Location: 1000122-1002068 bp Feature: domain Description: DAP2 Location: 1000482-1002024 bp Feature: domain Description: DAP2 Location: 1000482-1002024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ChoK-like (cd05151), ETNK_euk (cd05157), PLN02336 (phosphoethanolamine N-methyltransferase), RVT-Retrons, DAP2 (COG1506)

Seq: JH621481.1 Singulisphaera acidiphila DSM 18658 genomic scaffold Scaffold5, whole genome shotgun sequence (593410 bp)
Overview 1 RT 1: 32061-37381 bp Neighborhood of RT #1 [32061, 37381] YkwD CarboxypepD_reg RVT-GII GIIM RVT-GII Intron_maturas2 HNHc Feature: gene Location: 32061-32435 bp Feature: gene Location: 32395-33705 bp Feature: domain Description: YkwD Location: 32647-33049 bp Feature: domain Description: YkwD Location: 3264 7-3304 9 bp Feature: domain Description: CarboxypepD_reg Location: 33136-33295 bp Feature: domain Description: CarboxypepD_reg Location: 33136-33295 bp Feature: gene Location: 34362-34727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34365-34467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 365-34 4 67 bp Feature: domain Description: GIIM Note: maturase Location: 34524-34689 bp Feature: domain Description: GIIM Note: maturase Location: 34 524 -34 689 bp Feature: gene Location: 34829-36112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34838-34940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 838-34 94 0 bp Feature: domain Description: Intron_maturas2 Location: 35057-35258 bp Feature: domain Description: Intron_maturas2 Location: 35057-35258 bp Feature: domain Description: HNHc Note: nucleases Location: 35468-35654 bp Feature: domain Description: HNHc Note: nucleases Location: 354 68-35654 bp Feature: gene Location: 36144-36362 bp Feature: gene Location: 36590-37381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkwD (COG2340), CarboxypepD_reg (pfam13620), RVT-GII, GIIM (pfam08388), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JH621483.1 Singulisphaera acidiphila DSM 18658 genomic scaffold Scaffold7, whole genome shotgun sequence (477643 bp)
Overview 1 RT 1: 200771-202261 bp Neighborhood of RT #1 [200771, 203211] INT_C_like_6 RVT-UG5 Feature: gene Location: 200771-201157 bp Feature: gene Location: 201176-201361 bp Feature: domain Description: INT_C_like_6 Location: 201200-201344 bp Feature: domain Description: INT_C_like_6 Location: 201200-201344 bp Feature: gene Location: 201403-203211 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 201844-202261 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 201844-202261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_C_like_6 (cd01196), RVT-UG5

Seq: JH621492.1 Singulisphaera acidiphila DSM 18658 genomic scaffold Scaffold16, whole genome shotgun sequence (53006 bp)
Overview 1 RT 1: 40164-46940 bp Neighborhood of RT #1 [40164, 47407] fliG fliG YscJ_FliF fliF RVT-GII GIIM ArnT Feature: gene Location: 40164-40766 bp Feature: domain Description: fliG Location: 40263-40437 bp Feature: domain Description: fliG Location: 4026 3-40437 bp Feature: domain Description: fliG Location: 40458-40755 bp Feature: domain Description: fliG Location: 40458-40755 bp Feature: gene Location: 40763-42235 bp Feature: domain Description: YscJ_FliF Location: 40880-41444 bp Feature: domain Description: YscJ_FliF Location: 40880-41444 bp Feature: domain Description: fliF Location: 42134-42215 bp Feature: domain Description: fliF Location: 42134-42215 bp Feature: gene Location: 42727-44016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42964-43579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4296 4-43579 bp Feature: domain Description: GIIM Note: maturase Location: 43627-43831 bp Feature: domain Description: GIIM Note: maturase Location: 436 27-43831 bp Feature: gene Location: 44368-44979 bp Feature: gene Location: 45509-47407 bp Feature: domain Description: ArnT Location: 45626-46940 bp Feature: domain Description: ArnT Location: 456 26 -46 940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fliG (TIGR00207), YscJ_FliF (pfam01514), fliF (TIGR00206), RVT-GII, GIIM (pfam08388), ArnT (COG1807)

Seq: AHZQ01000587.1 Singulisphaera acidiphila DSM 18658 Scaffold49_1, whole genome shotgun sequence (1304 bp)
Overview 1 RT 1: 3-1264 bp Neighborhood of RT #1 [3, 1302] RVT-GII Feature: gene Location: 3-170 bp Feature: gene Location: 457-1302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 45-1264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AHZQ01000599.1 Singulisphaera acidiphila DSM 18658 Scaffold61_1, whole genome shotgun sequence (972 bp)
Overview 1 RT 1: 3-546 bp Neighborhood of RT #1 [3, 551] RVT-GII Feature: gene Location: 3-551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AHZQ01000613.1 Singulisphaera acidiphila DSM 18658 Scaffold74_1, whole genome shotgun sequence (633 bp)
Overview 1 RT 1: 1-475 bp Neighborhood of RT #1 [1, 567] RVT-GII GIIM Feature: gene Location: 1-567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52-190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52-19 0 bp Feature: domain Description: GIIM Note: maturase Location: 262-475 bp Feature: domain Description: GIIM Note: maturase Location: 262-475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)