myRT

myRT report for GCA_000256115.2_ASM25611v2

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Seq: AIDA02000093.1 Vibrio cyclitrophicus 1F97 1F-97_contig_52, whole genome shotgun sequence (1138 bp)
Overview 1 RT 1: 1-868 bp Neighborhood of RT #1 [1, 951] RVT-GII GIIM Feature: gene Location: 1-951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-598 bp Feature: domain Description: GIIM Note: maturase Location: 643-868 bp Feature: domain Description: GIIM Note: maturase Location: 643-868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AIDA02000062.1 Vibrio cyclitrophicus 1F97 1F-97_contig_201, whole genome shotgun sequence (19882 bp)
Overview 1 RT 1: 17627-19750 bp Neighborhood of RT #1 [17627, 19836] YhhI YhhI RVT-GII GIIM Feature: gene Location: 17627-18022 bp Feature: domain Description: YhhI Location: 17630-17858 bp Feature: domain Description: YhhI Location: 17630-17858 bp Feature: domain Description: YhhI Location: 17921-18020 bp Feature: domain Description: YhhI Location: 1792 1-1802 0 bp Feature: gene Location: 18242-18511 bp Feature: gene Location: 18511-19836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18790-19447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18790-19447 bp Feature: domain Description: GIIM Note: maturase Location: 19528-19750 bp Feature: domain Description: GIIM Note: maturase Location: 1952 8-19750 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: AIDA02000104.1 Vibrio cyclitrophicus 1F97 1F-97_contig_65, whole genome shotgun sequence (11683 bp)
Overview 1 RT 1: 2513-9289 bp Neighborhood of RT #1 [2513, 9390] COG3547 RVT_N RVT-GII COG3547 Mrr_cat Feature: gene Location: 2513-2809 bp Feature: domain Description: COG3547 Location: 2519-2762 bp Feature: domain Description: COG3 547 Location: 2519-2762 bp Feature: gene Location: 4065-4316 bp Feature: gene Location: 4519-5990 bp Feature: RT Description: RVT_N Location: 4567-4810 bp Feature: RT Description: RVT_N Location: 4567-4810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4855-5203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4855-5203 bp Feature: gene Location: 6281-7318 bp Feature: domain Description: COG3547 Location: 6293-7265 bp Feature: domain Description: COG3 547 Location: 6293 -7265 bp Feature: gene Location: 8398-9390 bp Feature: domain Description: Mrr_cat Location: 9049-9289 bp Feature: domain Description: Mrr_cat Location: 9049-9289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, Mrr_cat (pfam04471)

Seq: AIDA02000048.1 Vibrio cyclitrophicus 1F97 1F-97_contig_179, whole genome shotgun sequence (32565 bp)
Overview 1 RT 1: 11527-18784 bp Neighborhood of RT #1 [11527, 18789] GntR Peptidase_M9_N Peptidase_M9 RVT-GII ALDH_KGSADH PRK13971 Feature: gene Location: 11527-12198 bp Feature: domain Description: GntR Location: 11548-12178 bp Feature: domain Description: GntR Location: 1154 8-12178 bp Feature: gene Location: 12817-15003 bp Feature: domain Description: Peptidase_M9_N Location: 13042-13579 bp Feature: domain Description: Peptidase_M9_N Location: 1304 2-13579 bp Feature: domain Description: Peptidase_M9 Location: 13762-14611 bp Feature: domain Description: Peptidase_M9 Location: 13762-14 611 bp Feature: gene Location: 15664-15921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15862-15907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15862-15907 bp Feature: gene Location: 16261-17775 bp Feature: domain Description: ALDH_KGSADH Location: 16354-17695 bp Feature: domain Description: ALDH_KGSADH Location: 16354 -17695 bp Feature: gene Location: 17788-18789 bp Feature: domain Description: PRK13971 Location: 17791-18784 bp Feature: domain Description: PRK13971 Location: 17791-18784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GntR (pfam00392), Peptidase_M9_N (pfam08453), Peptidase_M9 (pfam01752), RVT-GII, ALDH_KGSADH (cd07129), PRK13971 (4-hydroxyproline epimerase)

Seq: AIDA02000092.1 Vibrio cyclitrophicus 1F97 1F-97_contig_51, whole genome shotgun sequence (37150 bp)
Overview 1 RT 1: 30013-33532 bp Neighborhood of RT #1 [30013, 33532] pfam03781 Avd_like RVT-DGRs Feature: gene Location: 30013-31263 bp Feature: domain Description: pfam03781 Location: 30475-30802 bp Feature: domain Description: pfam03781 Location: 30475 -30802 bp Feature: gene Location: 31331-31687 bp Feature: domain Description: Avd_like Location: 31355-31655 bp Feature: domain Description: Avd_like Location: 3135 5 -3165 5 bp Feature: gene Location: 31684-32952 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32125-32812 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32125 -32812 bp Feature: gene Location: 32953-33258 bp Feature: gene Location: 33332-33532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs

Seq: AIDA02000097.1 Vibrio cyclitrophicus 1F97 1F-97_contig_5_0, whole genome shotgun sequence (434233 bp)
Overview 1 RT 1: 177039-184607 bp Neighborhood of RT #1 [177039, 184612] MhpC AAA_21 RVT-Retrons pheT pheS Feature: gene Location: 177039-177263 bp Feature: domain Description: MhpC Location: 177144-177246 bp Feature: domain Description: MhpC Location: 177144-177246 bp Feature: gene Location: 177574-179808 bp Feature: domain Description: AAA_21 Location: 177649-178579 bp Feature: domain Description: AAA_21 Location: 1776 49-178579 bp Feature: gene Location: 179945-181117 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 180113-180734 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 180113-180734 bp Feature: gene Location: 181223-183610 bp Feature: domain Description: pheT Location: 181226-183608 bp Feature: domain Description: pheT Location: 181226 -1836 08 bp Feature: gene Location: 183629-184612 bp Feature: domain Description: pheS Location: 183632-184607 bp Feature: domain Description: pheS Location: 1836 32-1846 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MhpC (COG0596), AAA_21 (pfam13304), RVT-Retrons, pheT (PRK09616), pheS (TIGR00468)