myRT

myRT report for GCA_000256265.2_ASM25626v2

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Seq: AIDH02000031.1 Vibrio cyclitrophicus ZF14 ZF-14_contig_67, whole genome shotgun sequence (310582 bp)
Overview 1 RT 1: 126377-133897 bp Neighborhood of RT #1 [126377, 133932] RVT-Retrons PRK05658 dnaG Feature: gene Location: 126377-126875 bp Feature: gene Location: 126911-127627 bp Feature: gene Location: 127602-128804 bp Ori: OEE26315.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127746-128331 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 27746-1 28331 bp Feature: gene Location: 130237-132081 bp Ori: OEE26316.1 Feature: domain Description: PRK05658 Location: 130243-132079 bp Feature: domain Description: PRK05658 Location: 1 30243-1 32079 bp Feature: gene Location: 132181-133932 bp Ori: OEE26317.1 Feature: domain Description: dnaG Location: 132190-133897 bp Feature: domain Description: dnaG Location: 1 321 90-1 33897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK05658 (RNA polymerase sigma factor RpoD; Validated), dnaG (TIGR01391)

Seq: AIDH02000038.1 Vibrio cyclitrophicus ZF14 ZF-14_contig_81, whole genome shotgun sequence (1800110 bp)
Overview 1 RT 1: 873764-878847 bp 2 RT 2: 897865-905390 bp 3 RT 3: 976730-980962 bp Neighborhood of RT #1 [873764, 878847] HTH_1 PBP2_CrgA_like RVT_N RVT-GII GIIM Neighborhood of RT #2 [897865, 905395] HipA_Ec_like DUF2913 RVT_N RVT-GII GIIM COG3547 AppB Neighborhood of RT #3 [976730, 981111] DUF1281_C RVT-GII HTH_Tnp_1 HTH_Tnp_1 HTH_32 Tra5 Feature: gene Location: 873764-874696 bp Ori: OEE24233.1 Feature: domain Description: HTH_1 Location: 873773-873950 bp Feature: domain Description: HTH_1 Location: 873773-873950 bp Feature: domain Description: PBP2_CrgA_like Location: 874037-874625 bp Feature: domain Description: PBP2 _CrgA_like Location: 874037-87462 5 bp Feature: gene Location: 874799-875185 bp Feature: gene Location: 875688-877160 bp Ori: OEE24973.1 Feature: domain Description: RVT_N Location: 875736-875979 bp Feature: domain Description: RVT_N Location: 875736-875979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876024-876651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87602 4-876651 bp Feature: domain Description: GIIM Note: maturase Location: 876711-876936 bp Feature: domain Description: GIIM Note: maturase Location: 876711-876936 bp Feature: gene Location: 877931-878556 bp Feature: gene Location: 878629-878847 bp Feature: gene Location: 897865-899175 bp Ori: OEE24247.1 Feature: domain Description: HipA_Ec_like Location: 897928-899149 bp Feature: domain Description: HipA_Ec_like Location: 89792 8-899149 bp Feature: gene Location: 899877-900458 bp Ori: OEE24248.1 Feature: domain Description: DUF2913 Location: 899901-900423 bp Feature: domain Description: DUF2 913 Location: 899901-90042 3 bp Feature: gene Location: 900692-902164 bp Ori: OEE24249.1 Feature: domain Description: RVT_N Location: 900740-900980 bp Feature: domain Description: RVT_N Location: 900740-900980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901028-901655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90102 8-901655 bp Feature: domain Description: GIIM Note: maturase Location: 901712-901940 bp Feature: domain Description: GIIM Note: maturase Location: 901712 -901940 bp Feature: gene Location: 902867-903907 bp Ori: OEE24250.1 Feature: domain Description: COG3547 Location: 902879-903860 bp Feature: domain Description: COG3547 Location: 902 879-903860 bp Feature: gene Location: 904388-905395 bp Ori: OEE24251.1 Feature: domain Description: AppB Location: 904400-905390 bp Feature: domain Description: AppB Location: 904400-905390 bp Feature: gene Location: 976730-977236 bp Ori: OEE24308.1 Feature: domain Description: DUF1281_C Location: 977003-977186 bp Feature: domain Description: DUF12 81_C Location: 977003-977186 bp Feature: gene Location: 977263-977898 bp Feature: gene Location: 979046-979411 bp Ori: OEE24310.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979049-979259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 979049-9792 59 bp Feature: gene Location: 979562-980101 bp Ori: OEE24311.1 Feature: domain Description: HTH_Tnp_1 Location: 979637-979730 bp Feature: domain Description: HTH_Tnp_1 Location: 979637-979730 bp Feature: domain Description: HTH_Tnp_1 Location: 979754-979985 bp Feature: domain Description: HTH_Tnp_1 Location: 979754-979985 bp Feature: gene Location: 980224-981111 bp Ori: OEE24312.1 Feature: domain Description: HTH_32 Location: 980233-980404 bp Feature: domain Description: HTH_32 Location: 9802 33-980404 bp Feature: domain Description: Tra5 Location: 980470-980962 bp Feature: domain Description: Tra5 Location: 980470-980962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_CrgA_like (cd08422), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HipA_Ec_like (cd17808), DUF2913 (pfam11140), COG3547 (Transposase ), AppB (COG1294), DUF1281_C (pfam18406)
HTH_Tnp_1 (pfam01527), HTH_32 (pfam13565), Tra5 (COG2801)