myRT

myRT report for GCA_000256325.2_ASM25632v2

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Seq: AIDK02000063.1 Vibrio cyclitrophicus ZF65 ZF-65_contig_4, whole genome shotgun sequence (48972 bp)
Overview 1 RT 1: 46827-48967 bp Neighborhood of RT #1 [46827, 48972] DDE_Tnp_1_5 RVT_N RVT-GII Feature: gene Location: 46827-47141 bp Feature: gene Location: 47134-48054 bp Feature: domain Description: DDE_Tnp_1_5 Location: 47191-47521 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 471 91 -47521 bp Feature: gene Location: 48118-48972 bp Feature: RT Description: RVT_N Location: 48145-48388 bp Feature: RT Description: RVT_N Location: 481 45-48388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48433-48967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48433-48967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), RVT_N (pfam13655), RVT-GII

Seq: AIDK02000025.1 Vibrio cyclitrophicus ZF65 ZF-65_contig_156, whole genome shotgun sequence (290 bp)
Overview 1 RT 1: 1-289 bp Neighborhood of RT #1 [1, 290] RVT-GII GIIM Feature: gene Location: 1-290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10-118 bp Feature: domain Description: GIIM Note: maturase Location: 178-289 bp Feature: domain Description: GIIM Note: maturase Location: 178-2 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AIDK02000043.1 Vibrio cyclitrophicus ZF65 ZF-65_contig_21, whole genome shotgun sequence (20697 bp)
Overview 1 RT 1: 1-4629 bp 2 RT 2: 17395-20454 bp Neighborhood of RT #1 [1, 4634] RVT_N RVT-GII AraJ KOG4178 Neighborhood of RT #2 [17395, 20678] YafY EhpR_like RVT_N RVT-GII GIIM Feature: gene Location: 1-1035 bp Feature: RT Description: RVT_N Location: 208-451 bp Feature: RT Description: RVT_N Location: 208-451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-1030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 496-103 0 bp Feature: gene Location: 1638-2807 bp Feature: domain Description: AraJ Location: 1644-2775 bp Feature: domain Description: AraJ Location: 1644-2775 bp Feature: gene Location: 3660-4634 bp Feature: domain Description: KOG4178 Location: 3738-4629 bp Feature: domain Description: KOG4178 Location: 3 73 8-4629 bp Feature: gene Location: 17395-18096 bp Feature: domain Description: YafY Location: 17398-18058 bp Feature: domain Description: YafY Location: 173 98-18058 bp Feature: gene Location: 18161-18520 bp Feature: domain Description: EhpR_like Location: 18182-18518 bp Feature: domain Description: EhpR_like Location: 18182-18518 bp Feature: gene Location: 19206-20678 bp Feature: RT Description: RVT_N Location: 19254-19497 bp Feature: RT Description: RVT_N Location: 19254-19497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19542-20169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19542-20169 bp Feature: domain Description: GIIM Note: maturase Location: 20229-20454 bp Feature: domain Description: GIIM Note: maturase Location: 20229-20454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, AraJ (COG2814), KOG4178 (KOG4178, Soluble epoxide hydrolase ), YafY (COG2378), EhpR_like (cd07261), GIIM (pfam08388)

Seq: AIDK02000046.1 Vibrio cyclitrophicus ZF65 ZF-65_contig_22, whole genome shotgun sequence (480778 bp)
Overview 1 RT 1: 367932-373550 bp Neighborhood of RT #1 [367932, 373550] RVT-Retrons Feature: gene Location: 367932-368858 bp Feature: gene Location: 369466-369651 bp Feature: gene Location: 369995-370906 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 370094-370676 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 370094 -370676 bp Feature: gene Location: 370906-371892 bp Feature: gene Location: 372240-373550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons