myRT

myRT report for GCA_000258635.1_ASM25863v1

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Seq: AHZE01000077.1 Escherichia coli O104:H4 str. ON2010 contig77, whole genome shotgun sequence (72487 bp)
Overview 1 RT 1: 29349-33111 bp 2 RT 2: 59155-63398 bp Neighborhood of RT #1 [29349, 33143] PinE RVT-GII GIIM COG3436 TnpB_IS66 Neighborhood of RT #2 [59155, 63400] PHA02517 RVT-GII GIIM PHA02517 umuC Feature: gene Location: 29349-29996 bp Feature: domain Description: PinE Location: 29442-29991 bp Feature: domain Description: PinE Location: 29442-29991 bp Feature: gene Location: 30096-30497 bp Feature: gene Location: 30706-31746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30715-31333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3071 5-31 333 bp Feature: domain Description: GIIM Note: maturase Location: 31381-31612 bp Feature: domain Description: GIIM Note: maturase Location: 31 381 -31 61 2 bp Feature: gene Location: 31836-32762 bp Feature: domain Description: COG3436 Location: 32172-32652 bp Feature: domain Description: COG3436 Location: 321 72-32652 bp Feature: gene Location: 32793-33143 bp Feature: domain Description: TnpB_IS66 Location: 32820-33111 bp Feature: domain Description: TnpB_IS66 Location: 32820-331 1 1 bp Feature: gene Location: 59155-59298 bp Feature: gene Location: 59405-59884 bp Feature: domain Description: PHA02517 Location: 59465-59819 bp Feature: domain Description: PHA0251 7 Location: 59465-5981 9 bp Feature: gene Location: 60476-61999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60749-61481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60749-61 481 bp Feature: domain Description: GIIM Note: maturase Location: 61556-61754 bp Feature: domain Description: GIIM Note: maturase Location: 61 556-61 754 bp Feature: gene Location: 62176-62562 bp Feature: domain Description: PHA02517 Location: 62179-62560 bp Feature: domain Description: PHA0251 7 Location: 621 79-62560 bp Feature: gene Location: 62528-63400 bp Feature: domain Description: umuC Location: 62600-63398 bp Feature: domain Description: umuC Location: 62600-63398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717), PHA02517 (putative transposase OrfB; Reviewed), umuC (PRK03609)