myRT

myRT report for GCA_000259075.1_ASM25907v1

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Seq: AJKI01000018.1 Marinilabilia salmonicolor JCM 21150 Contig18, whole genome shotgun sequence (51474 bp)
Overview 1 RT 1: 8159-12613 bp Neighborhood of RT #1 [8159, 12786] YwqG YwqG RVT-GII GIIM DUF4372 DDE_Tnp_1 Feature: gene Location: 8159-8731 bp Feature: domain Description: YwqG Location: 8198-8249 bp Feature: domain Description: YwqG Location: 81 98-8249 bp Feature: domain Description: YwqG Location: 8321-8519 bp Feature: domain Description: YwqG Location: 8321 -851 9 bp Feature: gene Location: 8714-8902 bp Feature: gene Location: 9514-10830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9721-10336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9721 -1 0336 bp Feature: domain Description: GIIM Note: maturase Location: 10408-10621 bp Feature: domain Description: GIIM Note: maturase Location: 1 0408-1 0621 bp Feature: gene Location: 10932-11414 bp Feature: gene Location: 11614-12786 bp Feature: domain Description: DUF4372 Location: 11626-11839 bp Feature: domain Description: DUF4372 Location: 1 1 626-1 1 839 bp Feature: domain Description: DDE_Tnp_1 Location: 11983-12613 bp Feature: domain Description: DDE_Tnp_1 Location: 1 1 983-1 261 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609), YwqG (COG3878), RVT-GII, GIIM (pfam08388)

Seq: AJKI01000023.1 Marinilabilia salmonicolor JCM 21150 Contig23, whole genome shotgun sequence (17546 bp)
Overview 1 RT 1: 2536-6784 bp Neighborhood of RT #1 [2536, 6784] RVT_N RVT-GII GIIM OMP_RagA_SusC Feature: gene Location: 2536-3183 bp Feature: gene Location: 3368-3580 bp Feature: gene Location: 3989-5494 bp Feature: RT Description: RVT_N Location: 4016-4256 bp Feature: RT Description: RVT_N Location: 4016-42 56 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4301-4928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4301-492 8 bp Feature: domain Description: GIIM Note: maturase Location: 4982-5216 bp Feature: domain Description: GIIM Note: maturase Location: 4982 -52 16 bp Feature: gene Location: 5598-6485 bp Feature: domain Description: OMP_RagA_SusC Location: 5640-5862 bp Feature: domain Description: OMP_RagA_SusC Location: 5640-5862 bp Feature: gene Location: 6575-6784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), OMP_RagA_SusC (TIGR04056)

Seq: AJKI01000051.1 Marinilabilia salmonicolor JCM 21150 Contig51, whole genome shotgun sequence (51369 bp)
Overview 1 RT 1: 46547-50971 bp Neighborhood of RT #1 [46547, 51132] HSDR_N met_A_Alw26 met_A_Alw26 RVT-Retrons Feature: gene Location: 46547-49351 bp Feature: domain Description: HSDR_N Location: 46637-46976 bp Feature: domain Description: HSDR_N Location: 4663 7-46976 bp Feature: domain Description: met_A_Alw26 Location: 47624-48233 bp Feature: domain Description: met_A_Alw26 Location: 47624-4823 3 bp Feature: domain Description: met_A_Alw26 Location: 48245-49268 bp Feature: domain Description: met_A_Alw26 Location: 48245-49268 bp Feature: gene Location: 49734-49979 bp Feature: gene Location: 50317-51132 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50446-50971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 50446-50971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HSDR_N (pfam04313), met_A_Alw26 (TIGR02987), RVT-Retrons