myRT

myRT report for GCA_000260815.1_ASM26081v1

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Seq: AJJH01000063.1 Rhodococcus imtechensis RKJ300 = JCM 13270 strain RKJ300 Contig62_1, whole genome shotgun sequence (5428 bp)
Overview 1 RT 1: 2523-5317 bp Neighborhood of RT #1 [2523, 5428] DUF4189 Tra8 RVT-GII GIIM Phage_int_SAM_1 Feature: gene Location: 2523-2984 bp Feature: domain Description: DUF4189 Location: 2655-2925 bp Feature: domain Description: DUF41 89 Location: 2655-2925 bp Feature: gene Location: 3239-3700 bp Feature: domain Description: Tra8 Location: 3242-3635 bp Feature: domain Description: Tra8 Location: 3242-3635 bp Feature: gene Location: 3846-4580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3849-4134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3849-41 34 bp Feature: domain Description: GIIM Note: maturase Location: 4209-4425 bp Feature: domain Description: GIIM Note: maturase Location: 4209-4425 bp Feature: gene Location: 4747-5428 bp Feature: domain Description: Phage_int_SAM_1 Location: 5089-5317 bp Feature: domain Description: Phage_int_SAM_1 Location: 5089-531 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4189 (pfam13827), Tra8 (COG2826), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899)

Seq: AJJH01000141.1 Rhodococcus imtechensis RKJ300 = JCM 13270 strain RKJ300 Contig138_1, whole genome shotgun sequence (160615 bp)
Overview 1 RT 1: 65311-74207 bp Neighborhood of RT #1 [65311, 74207] SsuD RVT-GII GIIM Phage_int_SAM_1 INT_RitC_C_like INT_RitB_C_like InsE RVT-GII InsE Feature: gene Location: 65311-66474 bp Feature: domain Description: SsuD Location: 65392-66331 bp Feature: domain Description: SsuD Location: 65392 -66331 bp Feature: gene Location: 66795-67043 bp Feature: gene Location: 67735-68469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67738-68026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67738-6802 6 bp Feature: domain Description: GIIM Note: maturase Location: 68101-68329 bp Feature: domain Description: GIIM Note: maturase Location: 68101-6832 9 bp Feature: gene Location: 68580-69584 bp Feature: domain Description: Phage_int_SAM_1 Location: 68625-68874 bp Feature: domain Description: Phage_int_SAM_1 Location: 6862 5-68874 bp Feature: domain Description: INT_RitC_C_like Location: 68955-69504 bp Feature: domain Description: INT_RitC_C_like Location: 68955-69504 bp Feature: gene Location: 69574-70050 bp Feature: domain Description: INT_RitB_C_like Location: 69577-69988 bp Feature: domain Description: INT_RitB_C_like Location: 69577-69988 bp Feature: gene Location: 71080-71397 bp Feature: domain Description: InsE Location: 71095-71380 bp Feature: domain Description: InsE Location: 71095-71380 bp Feature: gene Location: 71431-71865 bp Feature: gene Location: 71930-72748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72251-72647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 2 51-72 647 bp Feature: gene Location: 73325-73732 bp Feature: domain Description: InsE Location: 73343-73679 bp Feature: domain Description: InsE Location: 73343-73679 bp Feature: gene Location: 73947-74207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SsuD (COG2141), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), INT_RitB_C_like (cd00797), InsE (COG2963)

Seq: AJJH01000100.1 Rhodococcus imtechensis RKJ300 = JCM 13270 strain RKJ300 Contig99_1, whole genome shotgun sequence (6175 bp)
Overview 1 RT 1: 1-4772 bp Neighborhood of RT #1 [1, 5173] GIIM RVT-GII xerC INT_tnpA_C_Tn554 Phage_integrase Feature: gene Location: 1-176 bp Feature: domain Description: GIIM Note: maturase Location: 4-106 bp Feature: domain Description: GIIM Note: maturase Location: 4-106 bp Feature: gene Location: 235-1314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-113 2 bp Feature: gene Location: 1743-2906 bp Feature: domain Description: xerC Location: 1884-2181 bp Feature: domain Description: xerC Location: 1884-2181 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 2322-2862 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 23 22-2862 bp Feature: gene Location: 2903-5173 bp Feature: domain Description: Phage_integrase Location: 4283-4772 bp Feature: domain Description: Phage_integrase Location: 4283 -4772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), xerC (PRK01287), INT_tnpA_C_Tn554 (cd01186), RVT-GII, Phage_integrase (pfam00589)