myRT

myRT report for GCA_000261525.1_43297

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Seq: AJPW01000139.1 Bradyrhizobium elkanii CCBAU 43297 Scaffold1.contig145, whole genome shotgun sequence (34552 bp)
Overview 1 RT 1: 2042-7833 bp Neighborhood of RT #1 [2042, 8933] UbiE RVT-Retrons Trypsin_2 Piwi_piwi-like_ProArk SIR2 Feature: gene Location: 2042-2680 bp Feature: domain Description: UbiE Location: 2063-2477 bp Feature: domain Description: UbiE Location: 2063-2477 bp Feature: gene Location: 2776-3099 bp Feature: gene Location: 4093-5691 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4255-4852 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4255-4852 bp Feature: domain Description: Trypsin_2 Location: 5209-5611 bp Feature: domain Description: Trypsin_2 Location: 5209-561 1 bp Feature: gene Location: 5773-7194 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 5818-7150 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 581 8-71 50 bp Feature: gene Location: 7191-8933 bp Feature: domain Description: SIR2 Location: 7266-7833 bp Feature: domain Description: SIR2 Location: 7266-7833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UbiE (COG2226), RVT-Retrons, Trypsin_2 (pfam13365), Piwi_piwi-like_ProArk (cd04659), SIR2 (pfam02146)

Seq: AJPW01000550.1 Bradyrhizobium elkanii CCBAU 43297 Scaffold7.contig15, whole genome shotgun sequence (1615 bp)
Overview 1 RT 1: 52-1239 bp Neighborhood of RT #1 [52, 1239] group_II_RT_mat RVT-GII Feature: gene Location: 52-378 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 58-352 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 58-352 bp Feature: gene Location: 347-637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-587 bp Feature: gene Location: 696-929 bp Feature: gene Location: 991-1239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: AJPW01000552.1 Bradyrhizobium elkanii CCBAU 43297 Scaffold7.contig17, whole genome shotgun sequence (13002 bp)
Overview 1 RT 1: 94-4603 bp Neighborhood of RT #1 [94, 4603] COG3547 RVT-DGRs RVT-GII GIIM Feature: gene Location: 94-960 bp Feature: domain Description: COG3547 Location: 118-856 bp Feature: domain Description: COG3 547 Location: 118-856 bp Feature: gene Location: 945-1202 bp Feature: gene Location: 1313-1558 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1403-1544 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1403 -1544 bp Feature: gene Location: 1566-2816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1770-2427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1770-2427 bp Feature: domain Description: GIIM Note: maturase Location: 2508-2730 bp Feature: domain Description: GIIM Note: maturase Location: 2508-273 0 bp Feature: gene Location: 3959-4117 bp Feature: gene Location: 4130-4603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-DGRs, RVT-GII, GIIM (pfam08388)

Seq: AJPW01000572.1 Bradyrhizobium elkanii CCBAU 43297 Scaffold9.contig13, whole genome shotgun sequence (16010 bp)
Overview 1 RT 1: 11663-15674 bp Neighborhood of RT #1 [11663, 15751] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII DDE_Tnp_IS66 COG3547 Feature: gene Location: 11663-12070 bp Feature: gene Location: 12453-12803 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12510-12591 bp Feature: domain Description: DDE_Tnp_IS66 Location: 12510-12591 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 12612-12666 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 12612-12666 bp Feature: gene Location: 13261-14421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13552-14215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13552-14 215 bp Feature: gene Location: 14539-15222 bp Feature: domain Description: DDE_Tnp_IS66 Location: 14635-15010 bp Feature: domain Description: DDE_Tnp_IS66 Location: 14 635-15010 bp Feature: gene Location: 15197-15751 bp Feature: domain Description: COG3547 Location: 15221-15674 bp Feature: domain Description: COG354 7 Location: 15221-15674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, COG3547 (Transposase )

Seq: AJPW01000590.1 Bradyrhizobium elkanii CCBAU 43297 Scaffold12.contig2, whole genome shotgun sequence (35908 bp)
Overview 1 RT 1: 19262-24618 bp Neighborhood of RT #1 [19262, 24692] HTH_Tnp_1 TnpB_IS66 RVT-GII RVT-GII GIIM RVT-GII GIIM TnpB_IS66 IstB_IS21_ATP IstB_IS21 Feature: gene Location: 19262-19669 bp Feature: domain Description: HTH_Tnp_1 Location: 19319-19487 bp Feature: domain Description: HTH_Tnp_1 Location: 19319-19487 bp Feature: gene Location: 19666-20067 bp Feature: domain Description: TnpB_IS66 Location: 19693-19843 bp Feature: domain Description: TnpB_IS66 Location: 19693-19843 bp Feature: gene Location: 20447-21124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20609-21092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20609-21092 bp Feature: gene Location: 21643-22893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21847-22504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21847-225 04 bp Feature: domain Description: GIIM Note: maturase Location: 22585-22807 bp Feature: domain Description: GIIM Note: maturase Location: 225 85 -22807 bp Feature: gene Location: 22901-23551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22973-23144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22973-23144 bp Feature: domain Description: GIIM Note: maturase Location: 23225-23450 bp Feature: domain Description: GIIM Note: maturase Location: 23225 -2345 0 bp Feature: gene Location: 23585-23779 bp Feature: domain Description: TnpB_IS66 Location: 23609-23750 bp Feature: domain Description: TnpB_IS66 Location: 23609-2375 0 bp Feature: gene Location: 23931-24692 bp Feature: domain Description: IstB_IS21_ATP Location: 24003-24087 bp Feature: domain Description: IstB_IS21_ATP Location: 24003-24087 bp Feature: domain Description: IstB_IS21 Location: 24093-24618 bp Feature: domain Description: IstB_IS21 Location: 24093-24618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695)

Seq: AJPW01000619.1 Bradyrhizobium elkanii CCBAU 43297 Scaffold37, whole genome shotgun sequence (1292 bp)
Overview 1 RT 1: 1-1132 bp Neighborhood of RT #1 [1, 1218] RVT-GII GIIM Feature: gene Location: 1-1218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172-829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172-829 bp Feature: domain Description: GIIM Note: maturase Location: 910-1132 bp Feature: domain Description: GIIM Note: maturase Location: 910-1132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJPW01000620.1 Bradyrhizobium elkanii CCBAU 43297 Scaffold38, whole genome shotgun sequence (1167 bp)
Overview 1 RT 1: 82-1006 bp Neighborhood of RT #1 [82, 1164] RVT-GII GIIM Feature: gene Location: 82-1164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115-733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115-7 33 bp Feature: domain Description: GIIM Note: maturase Location: 784-1006 bp Feature: domain Description: GIIM Note: maturase Location: 7 84-1006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)