myRT

myRT report for GCA_000261545.1_15354

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Seq: AJPX01000054.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold1.contig57, whole genome shotgun sequence (55605 bp)
Overview 1 RT 1: 44071-47895 bp Neighborhood of RT #1 [44071, 48407] RVT-GII GIIM HTH_36 Feature: gene Location: 44071-44568 bp Feature: gene Location: 44599-45162 bp Feature: gene Location: 45084-46385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45369-46008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45369-46008 bp Feature: domain Description: GIIM Note: maturase Location: 46083-46302 bp Feature: domain Description: GIIM Note: maturase Location: 46083-46302 bp Feature: gene Location: 47096-47344 bp Feature: gene Location: 47538-48407 bp Feature: domain Description: HTH_36 Location: 47724-47895 bp Feature: domain Description: HTH_36 Location: 47724-47895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_36 (pfam13730)

Seq: AJPX01000142.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold1.contig148, whole genome shotgun sequence (13724 bp)
Overview 1 RT 1: 8869-13635 bp Neighborhood of RT #1 [8869, 13670] Resolvase RVT-Retrons DUF3732 Feature: gene Location: 8869-9573 bp Feature: domain Description: Resolvase Location: 8896-9316 bp Feature: domain Description: Resolvase Location: 8896-9316 bp Feature: gene Location: 9841-10743 bp Feature: gene Location: 11255-13009 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11390-12029 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11390-12 02 9 bp Feature: gene Location: 13407-13670 bp Feature: domain Description: DUF3732 Location: 13413-13635 bp Feature: domain Description: DUF3732 Location: 13413-13635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-Retrons, DUF3732 (pfam12532)

Seq: AJPX01000367.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold4.contig36, whole genome shotgun sequence (41007 bp)
Overview 1 RT 1: 2366-9094 bp Neighborhood of RT #1 [2366, 9270] Trypsin_2 RVT-UG3 RVT-UG8 DUF2971 IstB_IS21 Feature: gene Location: 2366-3181 bp Feature: domain Description: Trypsin_2 Location: 2447-2975 bp Feature: domain Description: Trypsin_2 Location: 2447-2975 bp Feature: gene Location: 3204-3503 bp Feature: gene Location: 3896-5131 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4178-4661 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4178-4661 bp Feature: gene Location: 5181-7076 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5649-6087 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5649-6087 bp Feature: gene Location: 7307-8269 bp Feature: domain Description: DUF2971 Location: 7838-8045 bp Feature: domain Description: DUF2971 Location: 783 8-8045 bp Feature: gene Location: 8407-9270 bp Feature: domain Description: IstB_IS21 Location: 8569-9094 bp Feature: domain Description: IstB_IS21 Location: 8569-9094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trypsin_2 (pfam13365), RVT-UG3, RVT-UG8, DUF2971 (pfam11185), IstB_IS21 (pfam01695)

Seq: AJPX01000463.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold6.contig20, whole genome shotgun sequence (5817 bp)
Overview 1 RT 1: 3932-5735 bp Neighborhood of RT #1 [3932, 5815] Tra5 HTH_Tnp_1 RVT-GII GIIM Feature: gene Location: 3932-4804 bp Feature: domain Description: Tra5 Location: 3974-4682 bp Feature: domain Description: Tra5 Location: 3974 -4 682 bp Feature: gene Location: 4782-5036 bp Feature: domain Description: HTH_Tnp_1 Location: 4788-4995 bp Feature: domain Description: HTH_Tnp_1 Location: 4 788-4 995 bp Feature: gene Location: 5213-5815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5246-5426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 524 6-54 26 bp Feature: domain Description: GIIM Note: maturase Location: 5507-5735 bp Feature: domain Description: GIIM Note: maturase Location: 5507-5735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388)

Seq: AJPX01000464.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold6.contig21, whole genome shotgun sequence (2950 bp)
Overview 1 RT 1: 2-1606 bp Neighborhood of RT #1 [2, 1606] RVT-GII Feature: gene Location: 2-565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92-566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92-5 66 bp Feature: gene Location: 713-853 bp Feature: gene Location: 1472-1606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJPX01000492.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold6.contig49, whole genome shotgun sequence (13052 bp)
Overview 1 RT 1: 5846-12746 bp Neighborhood of RT #1 [5846, 13051] GalE PRK10060 RVT-GII GIIM GAF_2 GAF_2 GAF_2 GAF_2 GAF_2 Feature: gene Location: 5846-6838 bp Feature: domain Description: GalE Location: 5864-6824 bp Feature: domain Description: GalE Location: 586 4-6 824 bp Feature: gene Location: 7377-9104 bp Feature: domain Description: PRK10060 Location: 7704-9006 bp Feature: domain Description: PRK1006 0 Location: 7704-9006 bp Feature: gene Location: 8980-10281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9265-9904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 926 5-9904 bp Feature: domain Description: GIIM Note: maturase Location: 9979-10198 bp Feature: domain Description: GIIM Note: maturase Location: 9979-10198 bp Feature: gene Location: 10722-12038 bp Feature: domain Description: GAF_2 Location: 10746-10923 bp Feature: domain Description: GAF_2 Location: 10746 -10923 bp Feature: domain Description: GAF_2 Location: 11034-11472 bp Feature: domain Description: GAF_2 Location: 11034-11472 bp Feature: domain Description: GAF_2 Location: 11580-11967 bp Feature: domain Description: GAF_2 Location: 11580-1196 7 bp Feature: gene Location: 12083-13051 bp Feature: domain Description: GAF_2 Location: 12095-12206 bp Feature: domain Description: GAF_2 Location: 12095-12206 bp Feature: domain Description: GAF_2 Location: 12314-12746 bp Feature: domain Description: GAF_2 Location: 12314-12746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GalE (COG1087), PRK10060 (cyclic di-GMP phosphodiesterase), RVT-GII, GIIM (pfam08388), GAF_2 (pfam13185)

Seq: AJPX01000696.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold16.contig8, whole genome shotgun sequence (5719 bp)
Overview 1 RT 1: 2232-5716 bp Neighborhood of RT #1 [2232, 5716] RVT-GII GIIM Feature: gene Location: 2232-2474 bp Feature: gene Location: 2471-2989 bp Feature: gene Location: 2911-4212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3196-3835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3196-3835 bp Feature: domain Description: GIIM Note: maturase Location: 3910-4129 bp Feature: domain Description: GIIM Note: maturase Location: 3910-4129 bp Feature: gene Location: 4670-5716 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJPX01000712.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold17.contig8, whole genome shotgun sequence (12072 bp)
Overview 1 RT 1: 3208-11224 bp Neighborhood of RT #1 [3208, 11229] LptD RVT-GII GIIM RVT-GII GIIM PRK06215 Feature: gene Location: 3208-5655 bp Feature: domain Description: LptD Location: 3382-5578 bp Feature: domain Description: LptD Location: 338 2-5578 bp Feature: gene Location: 5673-5864 bp Feature: gene Location: 6365-7681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6653-7310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6653-7310 bp Feature: domain Description: GIIM Note: maturase Location: 7385-7589 bp Feature: domain Description: GIIM Note: maturase Location: 738 5-758 9 bp Feature: gene Location: 8238-9539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8523-9162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 523-9162 bp Feature: domain Description: GIIM Note: maturase Location: 9237-9456 bp Feature: domain Description: GIIM Note: maturase Location: 9237-9456 bp Feature: gene Location: 9566-10048 bp Feature: gene Location: 10492-11229 bp Feature: domain Description: PRK06215 Location: 10501-11224 bp Feature: domain Description: PRK06215 Location: 10501-11224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LptD (COG1452), RVT-GII, GIIM (pfam08388), PRK06215 (hypothetical protein; Provisional)

Seq: AJPX01000805.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold31.contig3, whole genome shotgun sequence (1912 bp)
Overview 1 RT 1: 3-1020 bp Neighborhood of RT #1 [3, 1046] RVT-GII Feature: gene Location: 3-1046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330-1020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330-1020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJPX01000823.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold37.contig3, whole genome shotgun sequence (14975 bp)
Overview 1 RT 1: 11326-14212 bp Neighborhood of RT #1 [11326, 14212] KOG3246 RVT-GII Feature: gene Location: 11326-11562 bp Feature: gene Location: 11831-12496 bp Feature: domain Description: KOG3246 Location: 11912-12431 bp Feature: domain Description: KOG3246 Location: 11912-12431 bp Feature: gene Location: 12800-13156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12917-13127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12917-13127 bp Feature: gene Location: 13568-13726 bp Feature: gene Location: 13739-14212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG3246 (KOG3246, Sentrin-specific cysteine protease (Ulp1 family) ), RVT-GII

Seq: AJPX01000870.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold67, whole genome shotgun sequence (2015 bp)
Overview 1 RT 1: 51-936 bp Neighborhood of RT #1 [51, 1292] RVT-GII Feature: gene Location: 51-1292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252-936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252-936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJPX01000881.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold78, whole genome shotgun sequence (1511 bp)
Overview 1 RT 1: 3-1296 bp Neighborhood of RT #1 [3, 1379] RVT-GII GIIM Feature: gene Location: 3-1379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-1002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363-1002 bp Feature: domain Description: GIIM Note: maturase Location: 1077-1296 bp Feature: domain Description: GIIM Note: maturase Location: 1077-12 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJPX01000925.1 Bradyrhizobium japonicum CCBAU 15354 Scaffold122, whole genome shotgun sequence (688 bp)
Overview 1 RT 1: 2-687 bp Neighborhood of RT #1 [2, 687] RVT-GII Feature: gene Location: 2-496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242-341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242-341 bp Feature: gene Location: 556-687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII