myRT

myRT report for GCA_000261565.1_15517

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Seq: AJPY01000682.1 Bradyrhizobium japonicum CCBAU 15517 Scaffold157.contig1, whole genome shotgun sequence (9205 bp)
Overview 1 RT 1: 45-4589 bp Neighborhood of RT #1 [45, 4846] DUF3732 RVT-Retrons Resolvase Feature: gene Location: 45-308 bp Feature: domain Description: DUF3732 Location: 51-273 bp Feature: domain Description: DUF3732 Location: 51 -273 bp Feature: gene Location: 706-2460 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 841-1480 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 841 -1 480 bp Feature: gene Location: 2972-3874 bp Feature: gene Location: 4142-4846 bp Feature: domain Description: Resolvase Location: 4169-4589 bp Feature: domain Description: Resolvase Location: 41 69-4589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3732 (pfam12532), RVT-Retrons, Resolvase (smart00857)

Seq: AJPY01000804.1 Bradyrhizobium japonicum CCBAU 15517 Scaffold242, whole genome shotgun sequence (5745 bp)
Overview 1 RT 1: 67-4469 bp Neighborhood of RT #1 [67, 4546] RVT-GII GIIM LptD Feature: gene Location: 67-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-1012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-1012 bp Feature: domain Description: GIIM Note: maturase Location: 1087-1291 bp Feature: domain Description: GIIM Note: maturase Location: 1087-12 91 bp Feature: gene Location: 1884-2075 bp Feature: gene Location: 2093-4546 bp Feature: domain Description: LptD Location: 2273-4469 bp Feature: domain Description: LptD Location: 2 2 73-4469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LptD (COG1452)

Seq: AJPY01000913.1 Bradyrhizobium japonicum CCBAU 15517 Scaffold336, whole genome shotgun sequence (2971 bp)
Overview 1 RT 1: 2088-2946 bp Neighborhood of RT #1 [2088, 2969] RVT-GII Feature: gene Location: 2088-2228 bp Feature: gene Location: 2234-2470 bp Feature: gene Location: 2376-2969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2466-2946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2466-2946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJPY01000914.1 Bradyrhizobium japonicum CCBAU 15517 Scaffold337, whole genome shotgun sequence (2948 bp)
Overview 1 RT 1: 2-2542 bp Neighborhood of RT #1 [2, 2898] SRAP DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII Feature: gene Location: 2-418 bp Feature: domain Description: SRAP Location: 38-362 bp Feature: domain Description: SRAP Location: 38-362 bp Feature: gene Location: 436-918 bp Feature: domain Description: DDE_Tnp_IS66 Location: 442-775 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4 4 2-775 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 796-910 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 796-910 bp Feature: gene Location: 1657-2898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1858-2542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1858-254 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII

Seq: AJPY01000934.1 Bradyrhizobium japonicum CCBAU 15517 Scaffold355, whole genome shotgun sequence (2498 bp)
Overview 1 RT 1: 1-1745 bp Neighborhood of RT #1 [1, 1745] RVT-GII Feature: gene Location: 1-222 bp Feature: gene Location: 333-689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450-660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 0-660 bp Feature: gene Location: 1101-1259 bp Feature: gene Location: 1272-1745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJPY01000970.1 Bradyrhizobium japonicum CCBAU 15517 Scaffold391, whole genome shotgun sequence (1945 bp)
Overview 1 RT 1: 133-1351 bp Neighborhood of RT #1 [133, 1434] RVT-GII GIIM Feature: gene Location: 133-1434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1054 bp Feature: domain Description: GIIM Note: maturase Location: 1132-1351 bp Feature: domain Description: GIIM Note: maturase Location: 1132-1351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJPY01000972.1 Bradyrhizobium japonicum CCBAU 15517 Scaffold393, whole genome shotgun sequence (1934 bp)
Overview 1 RT 1: 1-1018 bp Neighborhood of RT #1 [1, 1077] RVT-GII Feature: gene Location: 1-1077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-1018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-1018 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJPY01000975.1 Bradyrhizobium japonicum CCBAU 15517 Scaffold396, whole genome shotgun sequence (1898 bp)
Overview 1 RT 1: 2-1751 bp Neighborhood of RT #1 [2, 1873] RVT-GII GIIM HTH_Tnp_1 Tra5 Feature: gene Location: 2-592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26-203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26-203 bp Feature: domain Description: GIIM Note: maturase Location: 284-512 bp Feature: domain Description: GIIM Note: maturase Location: 28 4-512 bp Feature: gene Location: 769-1023 bp Feature: domain Description: HTH_Tnp_1 Location: 775-982 bp Feature: domain Description: HTH_Tnp_1 Location: 775-98 2 bp Feature: gene Location: 1001-1873 bp Feature: domain Description: Tra5 Location: 1043-1751 bp Feature: domain Description: Tra5 Location: 1043-1751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), Tra5 (COG2801)

Seq: AJPY01001097.1 Bradyrhizobium japonicum CCBAU 15517 Scaffold512, whole genome shotgun sequence (668 bp)
Overview 1 RT 1: 1-337 bp Neighborhood of RT #1 [1, 486] RVT-GII Feature: gene Location: 1-486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII