myRT

myRT report for GCA_000261625.1_83623

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Seq: AJQB01000674.1 Bradyrhizobium japonicum CCBAU 83623 Scaffold159.contig2, whole genome shotgun sequence (1908 bp)
Overview 1 RT 1: 3-1020 bp Neighborhood of RT #1 [3, 1046] RVT-GII Feature: gene Location: 3-1046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330-1020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330-1 020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQB01000675.1 Bradyrhizobium japonicum CCBAU 83623 Scaffold159.contig3, whole genome shotgun sequence (643 bp)
Overview 1 RT 1: 86-488 bp Neighborhood of RT #1 [86, 640] RVT-GII Feature: gene Location: 86-640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392-488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392 -488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQB01000700.1 Bradyrhizobium japonicum CCBAU 83623 Scaffold171.contig2, whole genome shotgun sequence (13726 bp)
Overview 1 RT 1: 8875-13641 bp Neighborhood of RT #1 [8875, 13676] Resolvase RVT-Retrons DUF3732 Feature: gene Location: 8875-9579 bp Feature: domain Description: Resolvase Location: 8902-9322 bp Feature: domain Description: Resolvase Location: 8902-93 22 bp Feature: gene Location: 9847-10749 bp Feature: gene Location: 11261-13015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11396-12035 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113 96-1203 5 bp Feature: gene Location: 13413-13676 bp Feature: domain Description: DUF3732 Location: 13419-13641 bp Feature: domain Description: DUF3 73 2 Location: 13 419-13 641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-Retrons, DUF3732 (pfam12532)

Seq: AJQB01000705.1 Bradyrhizobium japonicum CCBAU 83623 Scaffold176.contig1, whole genome shotgun sequence (8210 bp)
Overview 1 RT 1: 3502-7449 bp Neighborhood of RT #1 [3502, 7571] RVT-GII PHA02517 InsE RVT-GII GIIM HTH_Tnp_1 Tra5 Feature: gene Location: 3502-3642 bp Feature: gene Location: 3648-3884 bp Feature: gene Location: 3790-4470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3880-4360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3880-4 360 bp Feature: gene Location: 4506-5333 bp Feature: domain Description: PHA02517 Location: 4659-5298 bp Feature: domain Description: PHA02517 Location: 4 659-5298 bp Feature: gene Location: 5330-5635 bp Feature: domain Description: InsE Location: 5333-5606 bp Feature: domain Description: InsE Location: 5333-5606 bp Feature: gene Location: 5568-6290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5694-5901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5694 -5901 bp Feature: domain Description: GIIM Note: maturase Location: 5982-6210 bp Feature: domain Description: GIIM Note: maturase Location: 5982-6210 bp Feature: gene Location: 6416-6721 bp Feature: domain Description: HTH_Tnp_1 Location: 6473-6680 bp Feature: domain Description: HTH_Tnp_1 Location: 64 73-6680 bp Feature: gene Location: 6699-7571 bp Feature: domain Description: Tra5 Location: 6741-7449 bp Feature: domain Description: Tra5 Location: 674 1-74 4 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), GIIM (pfam08388), HTH_Tnp_1 (pfam01527), Tra5 (COG2801)

Seq: AJQB01000787.1 Bradyrhizobium japonicum CCBAU 83623 Scaffold226, whole genome shotgun sequence (8476 bp)
Overview 1 RT 1: 171-5236 bp Neighborhood of RT #1 [171, 5236] DUF2971 RVT-UG8 RVT-UG3 Feature: gene Location: 171-1163 bp Feature: domain Description: DUF2971 Location: 732-939 bp Feature: domain Description: DUF2971 Location: 732-939 bp Feature: gene Location: 1364-3259 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1832-2270 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1832-2270 bp Feature: gene Location: 3309-4544 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3591-4074 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 35 91-4074 bp Feature: gene Location: 4684-4908 bp Feature: gene Location: 4937-5236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2971 (pfam11185), RVT-UG8, RVT-UG3

Seq: AJQB01000832.1 Bradyrhizobium japonicum CCBAU 83623 Scaffold261, whole genome shotgun sequence (5757 bp)
Overview 1 RT 1: 73-4475 bp Neighborhood of RT #1 [73, 4552] RVT-GII GIIM LptD Feature: gene Location: 73-1389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361-1018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 1-1018 bp Feature: domain Description: GIIM Note: maturase Location: 1093-1297 bp Feature: domain Description: GIIM Note: maturase Location: 1093-1297 bp Feature: gene Location: 1890-2081 bp Feature: gene Location: 2099-4552 bp Feature: domain Description: LptD Location: 2279-4475 bp Feature: domain Description: LptD Location: 2279-4475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LptD (COG1452)

Seq: AJQB01001018.1 Bradyrhizobium japonicum CCBAU 83623 Scaffold407, whole genome shotgun sequence (1944 bp)
Overview 1 RT 1: 511-1729 bp Neighborhood of RT #1 [511, 1812] RVT-GII GIIM Feature: gene Location: 511-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 796-1435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 96-1435 bp Feature: domain Description: GIIM Note: maturase Location: 1510-1729 bp Feature: domain Description: GIIM Note: maturase Location: 1510-17 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJQB01001087.1 Bradyrhizobium japonicum CCBAU 83623 Scaffold465, whole genome shotgun sequence (1247 bp)
Overview 1 RT 1: 2-842 bp Neighborhood of RT #1 [2, 1198] RVT-GII Feature: gene Location: 2-1198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158-842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158 -8 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQB01001117.1 Bradyrhizobium japonicum CCBAU 83623 Scaffold495, whole genome shotgun sequence (982 bp)
Overview 1 RT 1: 288-979 bp Neighborhood of RT #1 [288, 979] RVT-GII Feature: gene Location: 288-644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-615 bp Feature: gene Location: 755-979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII