myRT

myRT report for GCA_000261645.1_05525

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Seq: AJQC01000246.1 Bradyrhizobium liaoningense CCBAU 05525 Scaffold5.contig3, whole genome shotgun sequence (1421 bp)
Overview 1 RT 1: 15-1239 bp Neighborhood of RT #1 [15, 1331] RVT-GII GIIM Feature: gene Location: 15-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303-960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303-960 bp Feature: domain Description: GIIM Note: maturase Location: 1035-1239 bp Feature: domain Description: GIIM Note: maturase Location: 1 035-1 239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJQC01000495.1 Bradyrhizobium liaoningense CCBAU 05525 Scaffold14.contig19, whole genome shotgun sequence (30970 bp)
Overview 1 RT 1: 2-4042 bp Neighborhood of RT #1 [2, 4042] DUF5131 RVT-UG20 Feature: gene Location: 2-232 bp Feature: domain Description: DUF5131 Location: 17-233 bp Feature: domain Description: DUF5131 Location: 17-2 33 bp Feature: gene Location: 566-2098 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 938-1436 bp Feature: RT Description: RVT-UG2 0 Note: UG2 0 RT Location: 938-1436 bp Feature: gene Location: 2764-3318 bp Feature: gene Location: 3341-4042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5131 (pfam07505), RVT-UG20

Seq: AJQC01000568.1 Bradyrhizobium liaoningense CCBAU 05525 Scaffold18.contig2, whole genome shotgun sequence (37105 bp)
Overview 1 RT 1: 13006-19158 bp Neighborhood of RT #1 [13006, 19346] Tra5 RVT-GII GIIM RVT-GII RVT-GII DUF5372 PinE Zn_ribbon_recom Recombinase RVT-GII HTH_32 Feature: gene Location: 13006-13206 bp Feature: gene Location: 13441-14220 bp Feature: domain Description: Tra5 Location: 13696-14149 bp Feature: domain Description: Tra5 Location: 13 696-14149 bp Feature: gene Location: 14051-14716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14057-14195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14057-14195 bp Feature: domain Description: GIIM Note: maturase Location: 14267-14495 bp Feature: domain Description: GIIM Note: maturase Location: 14267-14495 bp Feature: gene Location: 14727-15050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14748-14817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14748-14817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14820-14949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14820-14949 bp Feature: gene Location: 15068-15340 bp Feature: domain Description: DUF5372 Location: 15086-15311 bp Feature: domain Description: DUF53 72 Location: 15086-153 11 bp Feature: gene Location: 15396-15734 bp Feature: gene Location: 15832-17916 bp Feature: domain Description: PinE Location: 15895-16576 bp Feature: domain Description: PinE Location: 15895-16576 bp Feature: domain Description: Zn_ribbon_recom Location: 16843-17020 bp Feature: domain Description: Zn_ribbon_recom Location: 16843 -17020 bp Feature: domain Description: Recombinase Location: 17560-17665 bp Feature: domain Description: Recombinase Location: 17560-17665 bp Feature: gene Location: 17923-18249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18196-18241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18196-18241 bp Feature: gene Location: 18343-18615 bp Feature: gene Location: 18831-19346 bp Feature: domain Description: HTH_32 Location: 18936-19158 bp Feature: domain Description: HTH_3 2 Location: 1893 6-19158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342), PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508), HTH_32 (pfam13565)

Seq: AJQC01000756.1 Bradyrhizobium liaoningense CCBAU 05525 Scaffold31.contig5, whole genome shotgun sequence (13018 bp)
Overview 1 RT 1: 82-4446 bp Neighborhood of RT #1 [82, 4446] RVT-GII Feature: gene Location: 82-429 bp Feature: gene Location: 462-1844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789-1479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789-14 79 bp Feature: gene Location: 1915-2061 bp Feature: gene Location: 2137-4446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQC01000763.1 Bradyrhizobium liaoningense CCBAU 05525 Scaffold32.contig6, whole genome shotgun sequence (7644 bp)
Overview 1 RT 1: 3637-7611 bp Neighborhood of RT #1 [3637, 7643] RVT-GII GIIM Tra5 Feature: gene Location: 3637-4500 bp Feature: gene Location: 4553-5083 bp Feature: gene Location: 5600-6844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5804-6464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 804-6464 bp Feature: domain Description: GIIM Note: maturase Location: 6545-6770 bp Feature: domain Description: GIIM Note: maturase Location: 65 45 -6770 bp Feature: gene Location: 6837-7328 bp Feature: gene Location: 7359-7643 bp Feature: domain Description: Tra5 Location: 7362-7611 bp Feature: domain Description: Tra5 Location: 7362-7611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: AJQC01000919.1 Bradyrhizobium liaoningense CCBAU 05525 Scaffold68, whole genome shotgun sequence (8769 bp)
Overview 1 RT 1: 5432-8769 bp Neighborhood of RT #1 [5432, 8768] COG4249 M20_Acy1-like RVT-GII Feature: gene Location: 5432-7234 bp Feature: domain Description: COG4249 Location: 5462-6647 bp Feature: domain Description: COG4249 Location: 546 2-6 6 47 bp Feature: gene Location: 7339-7467 bp Feature: domain Description: M20_Acy1-like Location: 7345-7450 bp Feature: domain Description: M20_Acy1-like Location: 7345-7450 bp Feature: gene Location: 8172-8768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8373-8769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8373-876 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4249 (Uncharacterized protein, contains caspase domain ), M20_Acy1-like (cd08660), RVT-GII

Seq: AJQC01000929.1 Bradyrhizobium liaoningense CCBAU 05525 Scaffold72.contig4, whole genome shotgun sequence (2719 bp)
Overview 1 RT 1: 750-2661 bp Neighborhood of RT #1 [750, 2717] RVT-GII GIIM Feature: gene Location: 750-962 bp Feature: gene Location: 1151-1492 bp Feature: gene Location: 1485-2717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1689-2346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1689-2346 bp Feature: domain Description: GIIM Note: maturase Location: 2430-2661 bp Feature: domain Description: GIIM Note: maturase Location: 2430-2661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJQC01000996.1 Bradyrhizobium liaoningense CCBAU 05525 Scaffold122, whole genome shotgun sequence (1160 bp)
Overview 1 RT 1: 1-1028 bp Neighborhood of RT #1 [1, 1028] RVT-GII Feature: gene Location: 1-420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-421 bp Feature: gene Location: 462-656 bp Feature: gene Location: 726-1028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQC01001019.1 Bradyrhizobium liaoningense CCBAU 05525 Scaffold145, whole genome shotgun sequence (715 bp)
Overview 1 RT 1: 47-356 bp Neighborhood of RT #1 [47, 712] RVT-GII Feature: gene Location: 47-712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50-356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50-356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII