myRT

myRT report for GCA_000261665.1_83689

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Seq: AJQD01000308.1 Bradyrhizobium liaoningense CCBAU 83689 Scaffold76.contig1, whole genome shotgun sequence (8424 bp)
Overview 1 RT 1: 3-3344 bp Neighborhood of RT #1 [3, 3344] DUF5131 RVT-UG20 Feature: gene Location: 3-257 bp Feature: domain Description: DUF5131 Location: 18-243 bp Feature: domain Description: DUF51 31 Location: 1 8-243 bp Feature: gene Location: 511-2124 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 883-1381 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 883-1 381 bp Feature: gene Location: 2328-2564 bp Feature: gene Location: 2790-3344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5131 (pfam07505), RVT-UG20

Seq: AJQD01000435.1 Bradyrhizobium liaoningense CCBAU 83689 Scaffold132.contig1, whole genome shotgun sequence (9539 bp)
Overview 1 RT 1: 2-2653 bp Neighborhood of RT #1 [2, 2653] RVT-GII GIIM Feature: gene Location: 2-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206-863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 06-863 bp Feature: domain Description: GIIM Note: maturase Location: 947-1178 bp Feature: domain Description: GIIM Note: maturase Location: 947-1178 bp Feature: gene Location: 1194-1763 bp Feature: gene Location: 1772-2653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJQD01000544.1 Bradyrhizobium liaoningense CCBAU 83689 Scaffold186, whole genome shotgun sequence (13042 bp)
Overview 1 RT 1: 8573-12937 bp Neighborhood of RT #1 [8573, 12937] RVT-GII Feature: gene Location: 8573-10882 bp Feature: gene Location: 10958-11104 bp Feature: gene Location: 11175-12557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11502-12192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11502-12192 bp Feature: gene Location: 12590-12937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQD01000640.1 Bradyrhizobium liaoningense CCBAU 83689 Scaffold248.contig1, whole genome shotgun sequence (8117 bp)
Overview 1 RT 1: 4092-8086 bp Neighborhood of RT #1 [4092, 8115] COG3547 RVT-GII GIIM PHA02517 Feature: gene Location: 4092-5147 bp Feature: domain Description: COG3547 Location: 4140-5106 bp Feature: domain Description: COG354 7 Location: 4 14 0-5106 bp Feature: gene Location: 5247-5510 bp Feature: gene Location: 5682-6926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5886-6546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5886-654 6 bp Feature: domain Description: GIIM Note: maturase Location: 6627-6852 bp Feature: domain Description: GIIM Note: maturase Location: 6627-6852 bp Feature: gene Location: 6919-7410 bp Feature: gene Location: 7441-8115 bp Feature: domain Description: PHA02517 Location: 7510-8086 bp Feature: domain Description: PHA02517 Location: 7510-8086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: AJQD01000642.1 Bradyrhizobium liaoningense CCBAU 83689 Scaffold249, whole genome shotgun sequence (8769 bp)
Overview 1 RT 1: 2-2751 bp Neighborhood of RT #1 [2, 3338] RVT-GII M20_Acy1-like COG4249 Feature: gene Location: 2-598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203-599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203-5 99 bp Feature: gene Location: 1303-1431 bp Feature: domain Description: M20_Acy1-like Location: 1309-1414 bp Feature: domain Description: M20_Acy1-like Location: 1309-1414 bp Feature: gene Location: 1536-3338 bp Feature: domain Description: COG4249 Location: 1566-2751 bp Feature: domain Description: COG4249 Location: 15 66-275 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, M20_Acy1-like (cd08660), COG4249 (Uncharacterized protein, contains caspase domain )

Seq: AJQD01000820.1 Bradyrhizobium liaoningense CCBAU 83689 Scaffold402.contig2, whole genome shotgun sequence (1319 bp)
Overview 1 RT 1: 2-1059 bp Neighborhood of RT #1 [2, 1059] RVT-GII Feature: gene Location: 2-451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-422 bp Feature: gene Location: 493-687 bp Feature: gene Location: 757-1059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQD01000926.1 Bradyrhizobium liaoningense CCBAU 83689 Scaffold494, whole genome shotgun sequence (1549 bp)
Overview 1 RT 1: 77-1263 bp Neighborhood of RT #1 [77, 1263] group_II_RT_mat RVT-GII Feature: gene Location: 77-403 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 83-377 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 83-37 7 bp Feature: gene Location: 372-707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540-669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540-669 bp Feature: gene Location: 720-953 bp Feature: gene Location: 1015-1263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: AJQD01000938.1 Bradyrhizobium liaoningense CCBAU 83689 Scaffold505, whole genome shotgun sequence (1449 bp)
Overview 1 RT 1: 43-1267 bp Neighborhood of RT #1 [43, 1359] RVT-GII GIIM Feature: gene Location: 43-1359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331-988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331-98 8 bp Feature: domain Description: GIIM Note: maturase Location: 1063-1267 bp Feature: domain Description: GIIM Note: maturase Location: 1063-1267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJQD01000974.1 Bradyrhizobium liaoningense CCBAU 83689 Scaffold541, whole genome shotgun sequence (1184 bp)
Overview 1 RT 1: 2-674 bp Neighborhood of RT #1 [2, 673] RVT-GII Feature: gene Location: 2-673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287-674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287-674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQD01001079.1 Bradyrhizobium liaoningense CCBAU 83689 Scaffold644, whole genome shotgun sequence (700 bp)
Overview 1 RT 1: 47-356 bp Neighborhood of RT #1 [47, 697] RVT-GII Feature: gene Location: 47-697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50-356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50-356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII