myRT

myRT report for GCA_000261685.1_43298

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Seq: AJQE01000044.1 Bradyrhizobium sp. CCBAU 43298 Scaffold3.contig9, whole genome shotgun sequence (128301 bp)
Overview 1 RT 1: 125833-127927 bp Neighborhood of RT #1 [125833, 128298] RVT-GII Intron_maturas2 Feature: gene Location: 125833-126111 bp Feature: gene Location: 126473-126832 bp Feature: gene Location: 127060-128298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127081-127537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27081 -1 27537 bp Feature: domain Description: Intron_maturas2 Location: 127672-127927 bp Feature: domain Description: Intron_maturas2 Location: 1 27672-1 27927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: AJQE01000269.1 Bradyrhizobium sp. CCBAU 43298 Scaffold27.contig3, whole genome shotgun sequence (90129 bp)
Overview 1 RT 1: 87543-90110 bp Neighborhood of RT #1 [87543, 90115] GT_2_like_c PAP2_BcrC_like RVT-GII Feature: gene Location: 87543-88580 bp Feature: domain Description: GT_2_like_c Location: 87573-88308 bp Feature: domain Description: GT_2 _like_c Location: 87573-88308 bp Feature: gene Location: 88749-89609 bp Feature: domain Description: PAP2_BcrC_like Location: 89046-89430 bp Feature: domain Description: PAP2 _BcrC_like Location: 89046-89430 bp Feature: gene Location: 89936-90115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89942-90110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89942 -90110 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT_2_like_c (cd04186), PAP2_BcrC_like (cd03385), RVT-GII

Seq: AJQE01000289.1 Bradyrhizobium sp. CCBAU 43298 Scaffold31.contig3, whole genome shotgun sequence (77010 bp)
Overview 1 RT 1: 73424-76993 bp Neighborhood of RT #1 [73424, 76995] PurR Tar RVT-GII Feature: gene Location: 73424-74542 bp Feature: domain Description: PurR Location: 73496-74489 bp Feature: domain Description: PurR Location: 73 496-74489 bp Feature: gene Location: 74756-75310 bp Feature: domain Description: Tar Location: 74882-75305 bp Feature: domain Description: Tar Location: 74882-753 05 bp Feature: gene Location: 76330-76995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76606-76993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76606-76993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PurR (COG1609), Tar (COG0840), RVT-GII

Seq: AJQE01000392.1 Bradyrhizobium sp. CCBAU 43298 Scaffold60, whole genome shotgun sequence (30289 bp)
Overview 1 RT 1: 26836-29894 bp Neighborhood of RT #1 [26836, 29894] MdlB RVT-GII Feature: gene Location: 26836-27237 bp Feature: gene Location: 27245-28411 bp Feature: domain Description: MdlB Location: 27305-28388 bp Feature: domain Description: MdlB Location: 27305-28388 bp Feature: gene Location: 28408-29112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28735-29104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28735-29104 bp Feature: gene Location: 29154-29348 bp Feature: gene Location: 29706-29894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), RVT-GII

Seq: AJQE01000406.1 Bradyrhizobium sp. CCBAU 43298 Scaffold67, whole genome shotgun sequence (24775 bp)
Overview 1 RT 1: 3507-7985 bp Neighborhood of RT #1 [3507, 7985] PHA02518 LomR RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3507-4175 bp Feature: domain Description: PHA02518 Location: 3516-4113 bp Feature: domain Description: PHA025 18 Location: 35 16-4113 bp Feature: gene Location: 4619-5455 bp Feature: domain Description: LomR Location: 4655-5366 bp Feature: domain Description: LomR Location: 465 5 -5 366 bp Feature: gene Location: 5742-6719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5748-6345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 748-6345 bp Feature: domain Description: GIIM Note: maturase Location: 6411-6633 bp Feature: domain Description: GIIM Note: maturase Location: 6411-6633 bp Feature: gene Location: 6956-7681 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6974-7409 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6974-7409 bp Feature: gene Location: 7809-7985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02518 (ParA-like protein; Provisional), LomR (COG3637), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: AJQE01000410.1 Bradyrhizobium sp. CCBAU 43298 Scaffold69, whole genome shotgun sequence (24623 bp)
Overview 1 RT 1: 2-3305 bp Neighborhood of RT #1 [2, 3305] RVT-GII Feature: gene Location: 2-697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23-332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23-332 bp Feature: gene Location: 768-914 bp Feature: gene Location: 990-3305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQE01000420.1 Bradyrhizobium sp. CCBAU 43298 Scaffold76.contig2, whole genome shotgun sequence (5743 bp)
Overview 1 RT 1: 3221-5528 bp Neighborhood of RT #1 [3221, 5662] PHA02517 InsE RVT-Retrons HTH_XRE Feature: gene Location: 3221-4087 bp Feature: domain Description: PHA02517 Location: 3287-4073 bp Feature: domain Description: PHA02517 Location: 3287 -407 3 bp Feature: gene Location: 4084-4374 bp Feature: domain Description: InsE Location: 4093-4366 bp Feature: domain Description: InsE Location: 4093-4366 bp Feature: gene Location: 4468-5367 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4624-5158 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4624-5158 bp Feature: gene Location: 5354-5662 bp Feature: domain Description: HTH_XRE Location: 5366-5528 bp Feature: domain Description: HTH_XRE Location: 5366-5528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-Retrons, HTH_XRE (smart00530)

Seq: AJQE01000435.1 Bradyrhizobium sp. CCBAU 43298 Scaffold88, whole genome shotgun sequence (10222 bp)
Overview 1 RT 1: 5766-9240 bp Neighborhood of RT #1 [5766, 9240] Tra5 HTH_Tnp_1 RVT-GII GIIM Feature: gene Location: 5766-6638 bp Feature: domain Description: Tra5 Location: 5808-6516 bp Feature: domain Description: Tra5 Location: 58 08 -6516 bp Feature: gene Location: 6616-6870 bp Feature: domain Description: HTH_Tnp_1 Location: 6622-6829 bp Feature: domain Description: HTH_Tnp_1 Location: 6622-68 29 bp Feature: gene Location: 7047-8342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7302-7959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7302-7959 bp Feature: domain Description: GIIM Note: maturase Location: 8034-8262 bp Feature: domain Description: GIIM Note: maturase Location: 8 034-8 262 bp Feature: gene Location: 8347-8487 bp Feature: gene Location: 9106-9240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388)

Seq: AJQE01000448.1 Bradyrhizobium sp. CCBAU 43298 Scaffold100, whole genome shotgun sequence (5242 bp)
Overview 1 RT 1: 3607-5044 bp Neighborhood of RT #1 [3607, 5241] RVT-GII RVT-GII Feature: gene Location: 3607-3936 bp Feature: gene Location: 4006-4296 bp Feature: gene Location: 4430-4702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4433-4691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4433-469 1 bp Feature: gene Location: 4663-5241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4681-5044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4681-5044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQE01000467.1 Bradyrhizobium sp. CCBAU 43298 Scaffold117, whole genome shotgun sequence (2200 bp)
Overview 1 RT 1: 1463-2183 bp Neighborhood of RT #1 [1463, 2185] RVT-GII Feature: gene Location: 1463-2185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1790-2183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1790-2183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQE01000500.1 Bradyrhizobium sp. CCBAU 43298 Scaffold148, whole genome shotgun sequence (737 bp)
Overview 1 RT 1: 2-533 bp Neighborhood of RT #1 [2, 625] RVT-GII GIIM Feature: gene Location: 2-625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-254 bp Feature: domain Description: GIIM Note: maturase Location: 329-533 bp Feature: domain Description: GIIM Note: maturase Location: 329-533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJQE01000501.1 Bradyrhizobium sp. CCBAU 43298 Scaffold149, whole genome shotgun sequence (647 bp)
Overview 1 RT 1: 3-645 bp Neighborhood of RT #1 [3, 644] RVT-GII Feature: gene Location: 3-644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249-645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249-645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII