myRT

myRT report for GCA_000261725.1_15615

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Seq: AJQG01000186.1 Bradyrhizobium sp. CCBAU 15615 Scaffold2.contig94, whole genome shotgun sequence (68342 bp)
Overview 1 RT 1: 62823-67239 bp Neighborhood of RT #1 [62823, 67301] DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Feature: gene Location: 62823-62999 bp Feature: gene Location: 63127-63852 bp Feature: domain Description: DDE_Tnp_IS66 Location: 63145-63580 bp Feature: domain Description: DDE_Tnp_IS66 Location: 631 45-63580 bp Feature: gene Location: 64089-65297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64260-64923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64260-64923 bp Feature: domain Description: GIIM Note: maturase Location: 64989-65211 bp Feature: domain Description: GIIM Note: maturase Location: 64989-6521 1 bp Feature: gene Location: 65353-66189 bp Feature: domain Description: LomR Location: 65389-66100 bp Feature: domain Description: LomR Location: 65389-661 00 bp Feature: gene Location: 66633-67301 bp Feature: domain Description: PHA02518 Location: 66642-67239 bp Feature: domain Description: PHA0251 8 Location: 66642-67239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), LomR (COG3637), PHA02518 (ParA-like protein; Provisional)

Seq: AJQG01000187.1 Bradyrhizobium sp. CCBAU 15615 Scaffold2.contig95, whole genome shotgun sequence (4757 bp)
Overview 1 RT 1: 1390-4335 bp Neighborhood of RT #1 [1390, 4335] DDE_Tnp_1_4 RVT-GII RVT-GII Feature: gene Location: 1390-1794 bp Feature: gene Location: 1967-2422 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2003-2177 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2 003-2 177 bp Feature: gene Location: 2521-3279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2539-2902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 539-2 902 bp Feature: gene Location: 3240-3512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3243-3501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 43-3501 bp Feature: gene Location: 3634-3936 bp Feature: gene Location: 4006-4335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII

Seq: AJQG01000260.1 Bradyrhizobium sp. CCBAU 15615 Scaffold3.contig73, whole genome shotgun sequence (55333 bp)
Overview 1 RT 1: 17718-21567 bp Neighborhood of RT #1 [17718, 21567] RVT-GII GIIM COG3547 Feature: gene Location: 17718-17900 bp Feature: gene Location: 18273-18404 bp Feature: gene Location: 18870-20099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19071-19728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19071-19728 bp Feature: domain Description: GIIM Note: maturase Location: 19803-20007 bp Feature: domain Description: GIIM Note: maturase Location: 19803 -20007 bp Feature: gene Location: 20291-21004 bp Feature: domain Description: COG3547 Location: 20297-20948 bp Feature: domain Description: COG3 547 Location: 20297-20948 bp Feature: gene Location: 21346-21567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: AJQG01000328.1 Bradyrhizobium sp. CCBAU 15615 Scaffold6.contig10, whole genome shotgun sequence (31348 bp)
Overview 1 RT 1: 23228-31192 bp Neighborhood of RT #1 [23228, 31347] RVT-GII RVT-GII Feature: gene Location: 23228-25543 bp Feature: gene Location: 25619-25765 bp Feature: gene Location: 25836-27218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26163-26853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26163-26853 bp Feature: gene Location: 27580-27795 bp Feature: gene Location: 27857-28045 bp Feature: gene Location: 29874-30485 bp Feature: gene Location: 30538-30792 bp Feature: gene Location: 30934-31347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31096-31192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31096-31192 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQG01000334.1 Bradyrhizobium sp. CCBAU 15615 Scaffold7.contig2, whole genome shotgun sequence (83209 bp)
Overview 1 RT 1: 68310-71666 bp Neighborhood of RT #1 [68310, 71788] RVT-GII GIIM HTH_Tnp_1 Tra5 Feature: gene Location: 68310-68444 bp Feature: gene Location: 69063-69203 bp Feature: gene Location: 69209-70507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69464-70121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69464-70121 bp Feature: domain Description: GIIM Note: maturase Location: 70199-70427 bp Feature: domain Description: GIIM Note: maturase Location: 70199-70427 bp Feature: gene Location: 70633-70938 bp Feature: domain Description: HTH_Tnp_1 Location: 70690-70897 bp Feature: domain Description: HTH_Tnp_1 Location: 70690-70897 bp Feature: gene Location: 70916-71788 bp Feature: domain Description: Tra5 Location: 70958-71666 bp Feature: domain Description: Tra5 Location: 7095 8-71666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), Tra5 (COG2801)

Seq: AJQG01000382.1 Bradyrhizobium sp. CCBAU 15615 Scaffold15.contig1, whole genome shotgun sequence (9965 bp)
Overview 1 RT 1: 140-3425 bp Neighborhood of RT #1 [140, 3425] RVT-GII Feature: gene Location: 140-670 bp Feature: gene Location: 677-931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-923 bp Feature: gene Location: 2515-3078 bp Feature: gene Location: 3078-3425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AJQG01000411.1 Bradyrhizobium sp. CCBAU 15615 Scaffold35, whole genome shotgun sequence (1765 bp)
Overview 1 RT 1: 113-1250 bp Neighborhood of RT #1 [113, 1342] RVT-GII GIIM Feature: gene Location: 113-1342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 314-971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 314-97 1 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1250 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJQG01000424.1 Bradyrhizobium sp. CCBAU 15615 Scaffold48, whole genome shotgun sequence (996 bp)
Overview 1 RT 1: 2-911 bp Neighborhood of RT #1 [2, 994] RVT-GII GIIM Feature: gene Location: 2-994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32-650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32-650 bp Feature: domain Description: GIIM Note: maturase Location: 701-911 bp Feature: domain Description: GIIM Note: maturase Location: 701-911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)