myRT

myRT report for GCA_000261745.1_15635

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Seq: AJQH01000194.1 Bradyrhizobium sp. CCBAU 15635 Scaffold18.contig3, whole genome shotgun sequence (32152 bp)
Overview 1 RT 1: 18629-25711 bp Neighborhood of RT #1 [18629, 25711] RVT-UNC HTH_17 Feature: gene Location: 18629-22954 bp Feature: gene Location: 23266-23787 bp Feature: gene Location: 23966-25252 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 24458-24920 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 24458-24920 bp Feature: gene Location: 25261-25461 bp Feature: domain Description: HTH_17 Location: 25300-25447 bp Feature: domain Description: HTH_1 7 Location: 25300-25447 bp Feature: gene Location: 25466-25711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11/RVT-DGRs/RVT-CRISPR/RVT-UG4(RVT-UNC), HTH_17 (pfam12728)

Seq: AJQH01000308.1 Bradyrhizobium sp. CCBAU 15635 Scaffold39.contig2, whole genome shotgun sequence (69138 bp)
Overview 1 RT 1: 65629-68985 bp Neighborhood of RT #1 [65629, 69107] RVT-GII GIIM HTH_Tnp_1 Tra5 Feature: gene Location: 65629-65763 bp Feature: gene Location: 66382-66522 bp Feature: gene Location: 66528-67826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66783-67437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66783-67437 bp Feature: domain Description: GIIM Note: maturase Location: 67518-67746 bp Feature: domain Description: GIIM Note: maturase Location: 67518-67746 bp Feature: gene Location: 67952-68257 bp Feature: domain Description: HTH_Tnp_1 Location: 68009-68216 bp Feature: domain Description: HTH_Tnp_1 Location: 68009-682 16 bp Feature: gene Location: 68235-69107 bp Feature: domain Description: Tra5 Location: 68277-68985 bp Feature: domain Description: Tra5 Location: 682 77-68985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), Tra5 (COG2801)

Seq: AJQH01000361.1 Bradyrhizobium sp. CCBAU 15635 Scaffold60, whole genome shotgun sequence (28261 bp)
Overview 1 RT 1: 20577-28104 bp Neighborhood of RT #1 [20577, 28259] RVT-GII Resolvase Recombinase Zn_ribbon_recom PHA00617 RVT-GII RVT-GII Feature: gene Location: 20577-22892 bp Feature: gene Location: 22968-23114 bp Feature: gene Location: 23185-23721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23191-23371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 191-23 3 71 bp Feature: gene Location: 23636-25498 bp Feature: domain Description: Resolvase Location: 23648-24089 bp Feature: domain Description: Resolvase Location: 23 648-24089 bp Feature: domain Description: Recombinase Location: 24176-24536 bp Feature: domain Description: Recombinase Location: 24176-2453 6 bp Feature: domain Description: Zn_ribbon_recom Location: 24578-24764 bp Feature: domain Description: Zn_ribbon_recom Location: 24578-24764 bp Feature: gene Location: 25639-25968 bp Feature: domain Description: PHA00617 Location: 25765-25951 bp Feature: domain Description: PHA00617 Location: 25765-25951 bp Feature: gene Location: 26066-26788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26393-26786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263 93 -26786 bp Feature: gene Location: 27150-27365 bp Feature: gene Location: 27405-27707 bp Feature: gene Location: 27786-28259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28005-28104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28005-28104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), PHA00617 (ribbon-helix-helix domain containing protein)

Seq: AJQH01000367.1 Bradyrhizobium sp. CCBAU 15635 Scaffold63, whole genome shotgun sequence (24829 bp)
Overview 1 RT 1: 16833-21249 bp Neighborhood of RT #1 [16833, 21311] DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Feature: gene Location: 16833-17009 bp Feature: gene Location: 17137-17862 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17155-17590 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17155-17590 bp Feature: gene Location: 18099-19427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18390-19053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18390-19053 bp Feature: domain Description: GIIM Note: maturase Location: 19119-19341 bp Feature: domain Description: GIIM Note: maturase Location: 19119-1934 1 bp Feature: gene Location: 19363-20199 bp Feature: domain Description: LomR Location: 19399-20110 bp Feature: domain Description: LomR Location: 19399-20110 bp Feature: gene Location: 20643-21311 bp Feature: domain Description: PHA02518 Location: 20652-21249 bp Feature: domain Description: PHA02518 Location: 20652-2124 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), LomR (COG3637), PHA02518 (ParA-like protein; Provisional)

Seq: AJQH01000414.1 Bradyrhizobium sp. CCBAU 15635 Scaffold99, whole genome shotgun sequence (4799 bp)
Overview 1 RT 1: 1427-4372 bp Neighborhood of RT #1 [1427, 4372] DDE_Tnp_1_4 RVT-GII RVT-GII Feature: gene Location: 1427-1831 bp Feature: gene Location: 2004-2459 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2040-2214 bp Feature: domain Description: DDE_Tnp_1_4 Location: 2040-2214 bp Feature: gene Location: 2558-3316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2576-2939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 76-2939 bp Feature: gene Location: 3277-3549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3280-3538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3280-35 38 bp Feature: gene Location: 3671-3973 bp Feature: gene Location: 4043-4372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII

Seq: AJQH01000442.1 Bradyrhizobium sp. CCBAU 15635 Scaffold127, whole genome shotgun sequence (1237 bp)
Overview 1 RT 1: 1-1033 bp Neighborhood of RT #1 [1, 1125] RVT-GII GIIM Feature: gene Location: 1-1125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97-754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97-754 bp Feature: domain Description: GIIM Note: maturase Location: 829-1033 bp Feature: domain Description: GIIM Note: maturase Location: 829-1033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AJQH01000449.1 Bradyrhizobium sp. CCBAU 15635 Scaffold134, whole genome shotgun sequence (990 bp)
Overview 1 RT 1: 1-907 bp Neighborhood of RT #1 [1, 987] RVT-GII GIIM Feature: gene Location: 1-987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-643 bp Feature: domain Description: GIIM Note: maturase Location: 697-907 bp Feature: domain Description: GIIM Note: maturase Location: 697 -907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)