myRT

myRT report for GCA_000261865.1_25509

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Seq: AJQN01000091.1 Sinorhizobium fredii CCBAU 25509 Scaffold9.contig1, whole genome shotgun sequence (18449 bp)
Overview 1 RT 1: 2505-6037 bp Neighborhood of RT #1 [2505, 6138] ParD RVT_N RVT-CRISPR-like RVT-CRISPR-like HTH_17 XerC Feature: gene Location: 2505-2717 bp Feature: domain Description: ParD Location: 2511-2688 bp Feature: domain Description: ParD Location: 251 1 -2688 bp Feature: gene Location: 2882-3442 bp Feature: RT Description: RVT_N Location: 3023-3134 bp Feature: RT Description: RVT_N Location: 3023-31 34 bp Feature: gene Location: 3382-4491 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3571-3706 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3571 -3706 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3847-4042 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3847-4042 bp Feature: gene Location: 4533-4967 bp Feature: domain Description: HTH_17 Location: 4653-4791 bp Feature: domain Description: HTH_1 7 Location: 4653-4791 bp Feature: gene Location: 4942-6138 bp Feature: domain Description: XerC Location: 5197-6037 bp Feature: domain Description: XerC Location: 51 97-6037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParD (pfam09386), RVT_N (pfam13655), RVT-CRISPR, HTH_17 (pfam12728), XerC (COG4973)

Seq: AJQN01000348.1 Sinorhizobium fredii CCBAU 25509 Scaffold107, whole genome shotgun sequence (7999 bp)
Overview 1 RT 1: 1318-6228 bp Neighborhood of RT #1 [1318, 6233] HTH_Tnp_1 HTH_21 RVT-GII RVT-GII COG4644 Feature: gene Location: 1318-1668 bp Feature: domain Description: HTH_Tnp_1 Location: 1321-1543 bp Feature: domain Description: HTH_Tnp_1 Location: 132 1-1543 bp Feature: gene Location: 1740-1973 bp Feature: domain Description: HTH_21 Location: 1749-1854 bp Feature: domain Description: HTH_2 1 Location: 1749-1854 bp Feature: gene Location: 2164-3489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2419-3109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 419-3109 bp Feature: gene Location: 3821-3994 bp Feature: gene Location: 4282-5052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4288-4897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 88-4897 bp Feature: gene Location: 5058-5903 bp Feature: gene Location: 5904-6233 bp Feature: domain Description: COG4644 Location: 5919-6228 bp Feature: domain Description: COG4644 Location: 5919-62 2 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), RVT-GII, COG4644 (Transposase and inactivated derivatives, TnpA family )