myRT

myRT report for GCA_000261885.1_45436

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Seq: AJQO01000285.1 Sinorhizobium fredii CCBAU 45436 Scaffold16.contig2, whole genome shotgun sequence (4758 bp)
Overview 1 RT 1: 1742-4753 bp Neighborhood of RT #1 [1742, 4755] COG4644 RVT-GII group_II_RT_mat Feature: gene Location: 1742-2071 bp Feature: domain Description: COG4644 Location: 1757-2066 bp Feature: domain Description: COG4644 Location: 1 757-2066 bp Feature: gene Location: 2072-2917 bp Feature: gene Location: 2923-3693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2929-3538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2929-3538 bp Feature: gene Location: 3981-4154 bp Feature: gene Location: 4486-4755 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4603-4753 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4603-4753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4644 (Transposase and inactivated derivatives, TnpA family ), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: AJQO01000286.1 Sinorhizobium fredii CCBAU 45436 Scaffold16.contig3, whole genome shotgun sequence (9706 bp)
Overview 1 RT 1: 2-1841 bp Neighborhood of RT #1 [2, 1966] RVT-GII HTH_21 HTH_Tnp_1 Feature: gene Location: 2-1120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50-740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50-740 bp Feature: gene Location: 1311-1544 bp Feature: domain Description: HTH_21 Location: 1320-1425 bp Feature: domain Description: HTH_2 1 Location: 132 0-142 5 bp Feature: gene Location: 1616-1966 bp Feature: domain Description: HTH_Tnp_1 Location: 1619-1841 bp Feature: domain Description: HTH_Tnp_1 Location: 1619-1841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), HTH_Tnp_1 (pfam01527), RVT-GII