myRT

myRT report for GCA_000261945.1_83666

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Seq: AJQR01000047.1 Sinorhizobium fredii CCBAU 83666 Scaffold3.contig10, whole genome shotgun sequence (55315 bp)
Overview 1 RT 1: 15972-23251 bp Neighborhood of RT #1 [15972, 24720] PRK12278 INT_C_like_1 RVT-UG11 PLDc_unchar6 PLDc_unchar6 Feature: gene Location: 15972-16343 bp Feature: domain Description: PRK12278 Location: 15975-16332 bp Feature: domain Description: PRK1 2278 Location: 1 5975-1 6332 bp Feature: gene Location: 16828-18711 bp Feature: domain Description: INT_C_like_1 Location: 18100-18565 bp Feature: domain Description: INT_C_like_1 Location: 1 81 00-1 8565 bp Feature: gene Location: 19459-20274 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 19597-20032 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 9597-20032 bp Feature: gene Location: 20817-22364 bp Feature: gene Location: 22345-24720 bp Feature: domain Description: PLDc_unchar6 Location: 22591-22693 bp Feature: domain Description: PLDc_unchar6 Location: 22591 -22693 bp Feature: domain Description: PLDc_unchar6 Location: 22924-23251 bp Feature: domain Description: PLDc_unchar6 Location: 22924-23251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12278 (50S ribosomal protein L21), INT_C_like_1 (cd01184), RVT-UG11, PLDc_unchar6 (cd09176)

Seq: AJQR01000295.1 Sinorhizobium fredii CCBAU 83666 Scaffold43.contig1, whole genome shotgun sequence (28927 bp)
Overview 1 RT 1: 6935-9090 bp Neighborhood of RT #1 [6935, 9095] group_II_RT_mat RVT-GII TraH_2 Feature: gene Location: 6935-7399 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6938-7286 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6938-72 86 bp Feature: gene Location: 7408-7539 bp Feature: gene Location: 7599-8000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7896-7962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7896-7962 bp Feature: gene Location: 8171-8320 bp Feature: gene Location: 8496-9095 bp Feature: domain Description: TraH_2 Location: 8499-9090 bp Feature: domain Description: TraH_2 Location: 8499-9090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, TraH_2 (pfam06871)

Seq: AJQR01000428.1 Sinorhizobium fredii CCBAU 83666 Scaffold113, whole genome shotgun sequence (7685 bp)
Overview 1 RT 1: 1987-5583 bp Neighborhood of RT #1 [1987, 5583] RVT-GII GIIM PRK06526 Feature: gene Location: 1987-2220 bp Feature: gene Location: 2446-2574 bp Feature: gene Location: 2986-4269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3223-3841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 223 -3 841 bp Feature: domain Description: GIIM Note: maturase Location: 3889-4117 bp Feature: domain Description: GIIM Note: maturase Location: 3 889-4117 bp Feature: gene Location: 4385-5185 bp Feature: domain Description: PRK06526 Location: 4430-5120 bp Feature: domain Description: PRK06526 Location: 443 0-5120 bp Feature: gene Location: 5185-5583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK06526 (transposase; Provisional)

Seq: AJQR01000475.1 Sinorhizobium fredii CCBAU 83666 Scaffold155, whole genome shotgun sequence (1921 bp)
Overview 1 RT 1: 41-1469 bp Neighborhood of RT #1 [41, 1864] RVT-GII Feature: gene Location: 41-1864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 779-1469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 779-14 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII