myRT

myRT report for GCA_000262405.1_ASM26240v1

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Seq: JH660635.1 Microvirga lotononidis strain WSM3557 genomic scaffold Micloscaffold_3, whole genome shotgun sequence (184839 bp)
Overview 1 RT 1: 158261-164862 bp Neighborhood of RT #1 [158261, 164862] RVT-GII matK KOG4768 RVT-GII Intron_maturas2 HNHc PinE Feature: gene Location: 158261-158524 bp Feature: gene Location: 158521-158736 bp Feature: gene Location: 158984-160795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159245-160040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 59245-1 60040 bp Feature: domain Description: matK Location: 160166-160385 bp Feature: domain Description: matK Location: 1 601 66-1 60385 bp Feature: domain Description: KOG4768 Location: 160565-160751 bp Feature: domain Description: KOG4768 Location: 1 60565-1 60751 bp Feature: gene Location: 161100-161246 bp Feature: gene Location: 161418-162941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161427-162168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 427-1 621 68 bp Feature: domain Description: Intron_maturas2 Location: 162261-162573 bp Feature: domain Description: Intron_maturas2 Location: 1 62261 -1 62573 bp Feature: domain Description: HNHc Note: nucleases Location: 162690-162849 bp Feature: domain Description: HNHc Note: nucleases Location: 1 62690-1 62849 bp Feature: gene Location: 163710-164405 bp Feature: domain Description: PinE Location: 163755-164316 bp Feature: domain Description: PinE Location: 1 63755-1 6431 6 bp Feature: gene Location: 164521-164862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, matK (CHL00002), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Intron_maturas2 (pfam01348), HNHc (smart00507), PinE (COG1961)

Seq: JH660636.1 Microvirga lotononidis strain WSM3557 genomic scaffold Micloscaffold_4, whole genome shotgun sequence (146360 bp)
Overview 1 RT 1: 40106-45857 bp Neighborhood of RT #1 [40106, 45901] DDE_Tnp_ISAZ013 RVT-GII COG3547 COG3415 Feature: gene Location: 40106-40999 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 40133-40991 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 40133-40991 bp Feature: gene Location: 41117-41368 bp Feature: gene Location: 42545-44020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42953-43643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 953-43643 bp Feature: gene Location: 44037-45083 bp Feature: domain Description: COG3547 Location: 44088-45039 bp Feature: domain Description: COG3547 Location: 44088-45039 bp Feature: gene Location: 45341-45901 bp Feature: domain Description: COG3415 Location: 45467-45857 bp Feature: domain Description: COG3415 Location: 45467-45857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISAZ013 (pfam07592), RVT-GII, COG3547 (Transposase ), COG3415 (Transposase )

Seq: JH660633.1 Microvirga lotononidis strain WSM3557 genomic scaffold Micloscaffold_1, whole genome shotgun sequence (233383 bp)
Overview 1 RT 1: 102139-105947 bp Neighborhood of RT #1 [102139, 105982] Rve RVT-GII GIIM Rve GcrA Feature: gene Location: 102139-102849 bp Feature: gene Location: 103096-103533 bp Feature: domain Description: Rve Location: 103099-103495 bp Feature: domain Description: Rve Location: 103 099-103 495 bp Feature: gene Location: 103609-104868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103816-104467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 816-104467 bp Feature: domain Description: GIIM Note: maturase Location: 104548-104782 bp Feature: domain Description: GIIM Note: maturase Location: 104548-104782 bp Feature: gene Location: 105385-105630 bp Feature: domain Description: Rve Location: 105388-105607 bp Feature: domain Description: Rve Location: 1053 88-105607 bp Feature: gene Location: 105776-105982 bp Feature: domain Description: GcrA Location: 105797-105947 bp Feature: domain Description: GcrA Location: 105797-105947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388), GcrA (pfam07750)

Seq: JH660649.1 Microvirga lotononidis strain WSM3557 genomic scaffold Micloscaffold_17, whole genome shotgun sequence (57499 bp)
Overview 1 RT 1: 21514-28846 bp Neighborhood of RT #1 [21514, 29244] Rve PRK10993 RVT-GII GIIM COG3293 COG3293 PinE Zn_ribbon_recom Recombinase Feature: gene Location: 21514-21954 bp Feature: domain Description: Rve Location: 21538-21901 bp Feature: domain Description: Rve Location: 21538-21901 bp Feature: gene Location: 22933-23928 bp Feature: domain Description: PRK10993 Location: 23053-23920 bp Feature: domain Description: PRK10993 Location: 23053-23920 bp Feature: gene Location: 24032-25273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24224-24839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 224 -24 839 bp Feature: domain Description: GIIM Note: maturase Location: 24893-25103 bp Feature: domain Description: GIIM Note: maturase Location: 24 893-25103 bp Feature: gene Location: 25899-26660 bp Feature: domain Description: COG3293 Location: 25923-26277 bp Feature: domain Description: COG3293 Location: 25923-26277 bp Feature: domain Description: COG3293 Location: 26289-26637 bp Feature: domain Description: COG3293 Location: 26289-26637 bp Feature: gene Location: 27043-29244 bp Feature: domain Description: PinE Location: 27091-27787 bp Feature: domain Description: PinE Location: 27091-27787 bp Feature: domain Description: Zn_ribbon_recom Location: 28039-28162 bp Feature: domain Description: Zn_ribbon_recom Location: 28039-28162 bp Feature: domain Description: Recombinase Location: 28747-28846 bp Feature: domain Description: Recombinase Location: 2874 7-2884 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), PRK10993 (omptin family outer membrane protease), RVT-GII, GIIM (pfam08388), COG3293 (Transposase ), PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508)

Seq: JH660634.1 Microvirga lotononidis strain WSM3557 genomic scaffold Micloscaffold_2, whole genome shotgun sequence (26102 bp)
Overview 1 RT 1: 51-2370 bp Neighborhood of RT #1 [51, 2504] RVT-GII Recombinase Zn_ribbon_recom Feature: gene Location: 51-938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123-756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123-75 6 bp Feature: gene Location: 889-1524 bp Feature: gene Location: 1614-2504 bp Feature: domain Description: Recombinase Location: 1782-2139 bp Feature: domain Description: Recombinase Location: 1782-2139 bp Feature: domain Description: Zn_ribbon_recom Location: 2193-2370 bp Feature: domain Description: Zn_ribbon_recom Location: 2193-2370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII